Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= AAMG01001138.1 Length=202 Score E Sequences producing significant alignments: (Bits) Value seq96 91.5 2e-16 seq142 78.8 1e-12 >seq96 Length=18243 Score = 91.5 bits (100), Expect = 2e-16 Identities = 108/148 (73%), Gaps = 2/148 (1%) Strand=Plus/Plus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| |||| | |||| || |||||||||| || | | ||||||| ||| Sbjct 10011 GGGTCTTTCTGTCCAGGTGTAGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAG 10070 Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 | | | | ||||||| |||||| |||||||| ||| ||||||||| | Sbjct 10071 C-CTCTCTCCGAGACAGCGCCCAGATCGTTACACCTTTCGTGCACGTCAGAACTTACCTG 10129 Query 144 ACAAGGAATTTCGCTACCTTAGGACCGT 171 ||||||||||||||||||||||||| || Sbjct 10130 ACAAGGAATTTCGCTACCTTAGGACTGT 10157 >seq142 Length=60166 Score = 78.8 bits (86), Expect = 1e-12 Identities = 100/142 (70%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 ||||||| |||| | |||||| || |||||||||| || | | ||||||||||||| Sbjct 13038 GGGTCTTACCGTCTTTTTTCGGGTACTCCGCATCTTCACGGAGAATTCAATTTCACTGAG 12979 Query 85 CTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGA 144 || | | ||||||| || |||||| |||||| | | ||| | Sbjct 12978 TCCATGTTGGAGACAGTGGGGCAGTCGTGACGCCATTCATGCAGGGCACTAATTAGGTGT 12919 Query 145 CAAGGAATTTCGCTACCTTAGG 166 |||||||||||||||||||||| Sbjct 12918 CAAGGAATTTCGCTACCTTAGG 12897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547196411223