Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq42 230 5e-58 seq142 188 2e-45 >seq42 Length=3281 Score = 230 bits (254), Expect = 5e-58 Identities = 254/333 (76%), Gaps = 14/333 (4%) Strand=Plus/Minus Query 3 TTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCAT 62 |||||| ||| || ||||||| | | ||| |||||||| || |||||||||||||||| Sbjct 1140 TTACAACCCGCAGGCCTTCTTCCTC-CACACGGCATTG-CTCCGTCAGGCTTTCGCCCAT 1083 Query 63 TGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 122 || || ||||| ||||||||||| |||||| ||||||| |||||||||||| |||||| Sbjct 1082 TGCGGAAGATTCCTCACTGCTGCCTTCCGTAGAAGTCTGGGCCGTGTCTCAGTCCCAGTG 1023 Query 123 TGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACC 182 || |||||||||||||||||||| ||| ||||||||||||||| ||| |||||| ||| Sbjct 1022 TGGCTGATCATCCTCTCAGACCAACTACTGATCGTCGCCTTGGTAAGCTTTTACCTTACC 963 Query 183 AACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTC 242 ||| |||||||| ||| | || ||| | || | | | | | || | ||| Sbjct 962 AACAAGCTAATCAGACGCAAGCCCAT-TCTTA-------GGCGGTTGTTACC--GTTTTA 913 Query 243 TCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAGGC 302 || || | |||| ||||||||| |||||||| |||||||||| | ||| Sbjct 912 CTCCTCAG--CATATGGGGTATTAGCAACCGTTTCCAGTTGTTATCCCCCTCCTAAGGGC 855 Query 303 AGATTCCTAGGCATTACTCACCCGTCCGCCGCT 335 || ||| || || ||||||||||||||||| || Sbjct 854 AGGTTCTTACGCGTTACTCACCCGTCCGCCACT 822 >seq142 Length=60166 Score = 188 bits (208), Expect = 2e-45 Identities = 145/171 (85%), Gaps = 1/171 (1%) Strand=Plus/Minus Query 41 GCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCT 100 ||||||||||||| ||||||||||||||| ||||| |||||||||| | || | | |||| Sbjct 16335 GCTGGATCAGGCTCTCGCCCATTGTCCAAAATTCCTCACTGCTGCCGCTCGAAAGCGTCT 16276 Query 101 GGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGC 160 || |||||||||||| |||||||| ||||||||||||||||||||| || ||||| ||| Sbjct 16275 GGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGCTAAGGATCATCGG 16216 Query 161 CTTGG-TGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCATCT 210 ||||| | ||| |||||| |||||||| ||||||| || |||||||| Sbjct 16215 CTTGGATAAGCTTTTACCTTACCAACTACCTAATCCTACGCGAGCTCATCT 16165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071992742560