Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq142 174 6e-41 seq96 147 8e-33 seq153 75.2 4e-11 >seq142 Length=60166 Score = 174 bits (192), Expect = 6e-41 Identities = 286/407 (70%), Gaps = 18/407 (4%) Strand=Plus/Minus Query 192 TTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCAC 251 || ||||||| ||||| ||||||||| | || | || | |||||||||| |||||| Sbjct 8651 TTTACCCCTAACCACAAGTCATCCCCGCCTATTGCCACAGACGTGGGTTCGGCCCTCCAA 8592 Query 252 GCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCT--TGA 309 ||| |||||| ||||||||||| ||||| |||||||| | |||||||| | | Sbjct 8591 AAGGTGTTACCCTTTCTTCAACCTGCTCATGGCTAGATCACCCGGTTTCGGGTCAAATCA 8532 Query 310 TCGTG-CCACTCATAC--GCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGGG 366 || || | || ||| |||| |||||| |||| || | || | || |||| Sbjct 8531 ATGTAACCGTTTATTTTTGCCTTATTTAGACTCGTTTTCACTTTGCCTCCACCTAACGGC 8472 Query 367 TTAACCTCGCGACACAACGCAA--ACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCAC 424 |||| || || ||| | | |||||| | | |||| | ||||||| |||| || || Sbjct 8471 TTAAGCTAGCTACAT---GGATTTACTCGCTGACCCATTATACAAAAGGTACGCTGTTAC 8415 Query 425 CTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTAT 484 || |||| |||| | || | ||||| || | ||||||||| || | Sbjct 8414 TCTTTATAAAAAAA-------AGCTTCAACTGTTTGTAAGCTCTGGGTTTCAGGATCTTT 8362 Query 485 TTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTC 544 |||||||||| ||||| |||||||||||||| |||| |||||||| | ||||||||| Sbjct 8361 TTCACTCCCCATTTGGGGTTCTTTTCACCTTTCCTTCACAGTACTTGTTCACTATCGGTC 8302 Query 545 ACCA-AGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACAC 590 | | | | |||||||||||| |||||||||| | | |||| || Sbjct 8301 AAAACAATAATATTTAGGCTTAGAGGGTGGTCCCCCTAACTTCAAAC 8255 >seq96 Length=18243 Score = 147 bits (162), Expect = 8e-33 Identities = 216/303 (71%), Gaps = 17/303 (6%) Strand=Plus/Plus Query 136 CGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCA 195 |||||| ||| || |||||||||||||| ||||||| | | |||| ||||||| ||||| Sbjct 11598 CGCTGCGCCTCAACGCATTTCGGGGAGATCCAGCTAGCTCCGAGTTCGATTGGCATTTCA 11657 Query 196 CCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGG 255 |||||| ||||| |||||| | | |||||||| | || ||||||| ||| ||| || Sbjct 11658 CCCCTAACCACAACTCATCCGCCGATTTTTCAACATCGGTCGGTTCGGACCTTCACTTGG 11717 Query 256 TCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTC--TTGATCGT 313 | |||||| | |||| |||| |||||| |||||||| | |||||||| | || Sbjct 11718 TTTTACCCAAGTTTCATCCTGGCCATGGTTAGATCACCCGGGTTCGGGTCCATAAGAAGT 11777 Query 314 GCC---ACTCATA---------CGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCAC 361 | | ||| || |||||||| |||||||||||||| |||| | Sbjct 11778 GACAAAACTTTTAAAAGTGTTTTGCCCTATTAAGACTCGCTTTCGCTTTGGCTTCGGGTT 11837 Query 362 ACGGGTTAACCTCGCGACACAACGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCG 420 |||||| || ||| | | || |||| |||||||||||||| |||||||| | Sbjct 11838 TTCCCTTAACCAAGC--CACTTCTTATAAGTCGCCGGCTCATTCTTCAACAGGCACGCGG 11895 Query 421 TCA 423 ||| Sbjct 11896 TCA 11898 Score = 120 bits (132), Expect = 1e-24 Identities = 106/131 (81%), Gaps = 1/131 (1%) Strand=Plus/Plus Query 470 GGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTT-CACCTTTCCCTCACGGTAC 528 ||||||| || |||||||||||||| |||||||| ||||| |||||||||||| |||||| Sbjct 12164 GGTTTCATGTTCTATTTCACTCCCCTCCAGGGGTTCTTTTTCACCTTTCCCTCGCGGTAC 12223 Query 529 TTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCAC 588 | | | |||||||||| | | ||||||||| |||| |||||||| ||||||| Sbjct 12224 TATTTCACTATCGGTCATCCAAAAGTATTTAGCCTTACGAGGTGGTCCTCGTTGATTCAC 12283 Query 589 ACGAAATTTCA 599 ||| |||||| Sbjct 12284 ACGGGATTTCA 12294 >seq153 Length=8666 Score = 75.2 bits (82), Expect = 4e-11 Identities = 55/64 (86%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 502 GTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGG 561 || ||||||| |||||||||||||||||||| ||||||||||| || ||||||||| Sbjct 4366 GTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCCCGTCAGTATTTAGC 4425 Query 562 CTTA 565 |||| Sbjct 4426 CTTA 4429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817587694848