Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq142 192 1e-46 seq96 149 2e-33 >seq142 Length=60166 Score = 192 bits (212), Expect = 1e-46 Identities = 291/398 (73%), Gaps = 21/398 (5%) Strand=Plus/Minus Query 9 CCACAGGTCATTCC-GCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGT 67 ||||| ||||| || || || || | || | || ||||||| |||||| || || Sbjct 8640 CCACAAGTCATCCCCGC---CTATTGCCACAGACGTGGGTTCGGCCCTCCAAAAGGT-GT 8585 Query 68 TACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATT---TCC 124 ||||| ||| |||||||| ||| || |||||| |||||||| |||||| | | | Sbjct 8584 TACCCTTTCTT-CAACCTGCTCAT-GGCTAGATCACCCGGTTT-CGGGTCAAATCAATGT 8528 Query 125 CAGCGACTAGAC--GCCCTAGTAAGACTCGCTTTTCGCTACGCCTCC-CCTATTCGGTTA 181 | || || ||| || | ||||||| ||||| || |||||| |||| | ||| Sbjct 8527 AACCGTTTATTTTTGCCTTATTTAGACTCG-TTTTCACTTTGCCTCCACCTAACGGCTTA 8469 Query 182 AGCTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCC--- 238 |||| || || | | | |||||||||||||||||||||||||||| || || | Sbjct 8468 AGCTA-GCTACATGGATTTACTCGCTGACCCATTATACAAAAGGTACGCTGTTACTCTTT 8410 Query 239 AACAAAGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTC 298 | ||| ||| | |||| ||||| || ||||||||||||| ||||||||||| Sbjct 8409 ATAAAAAAAAGCTTCAACTGTTTGTAAGCTCTGGGTTTCAGGATCTTTTTCACTCCCCAT 8350 Query 299 TCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTC-AGTCAGTAGT 357 | |||||||||||| ||||||| |||| ||||| |||||||||||||| | || || | Sbjct 8349 TT-GGGGTTCTTTTCACCTTTCCTTCACAGTACTTGTTCACTATCGGTCAAAACAATAAT 8291 Query 358 ATTTAGCCTTGGAGGATGGTCCCCCCATATTCAGACAA 395 |||||| ||| |||| ||||||||| | |||| |||| Sbjct 8290 ATTTAGGCTTAGAGGGTGGTCCCCCTAACTTCAAACAA 8253 >seq96 Length=18243 Score = 149 bits (164), Expect = 2e-33 Identities = 140/173 (81%), Gaps = 4/173 (2%) Strand=Plus/Plus Query 250 CTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTC- 308 ||||||||||||| || |||||||||| | ||||||||||||||||| | ||||||| Sbjct 12142 CTCCCACTGCTTGACAGCTTACGGTTTCATGTTCTATTTCACTCCCCTC-CAGGGGTTCT 12200 Query 309 TTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTT- 367 ||||| |||||||||| |||||||| |||||||||||||| || ||||||||||||| Sbjct 12201 TTTTCACCTTTCCCTCGCGGTACTATTTCACTATCGGTCATCCAAAAGTATTTAGCCTTA 12260 Query 368 GGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 |||| |||||| | ||||| || |||| ||||| || | ||||||| Sbjct 12261 CGAGG-TGGTCCTCGTTGATTCACACGGGATTTCACGTGCCCCATGCTACTCG 12312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241591594368