Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq42 203 6e-50 seq142 165 2e-38 >seq42 Length=3281 Score = 203 bits (224), Expect = 6e-50 Identities = 230/305 (75%), Gaps = 15/305 (5%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | ||||| |||| ||||||| | || || || ||||||||||| |||||| Sbjct 1110 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAGATTCCTCACTGCTGCCTTCCGTAG 1051 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 |||||||||||||||||||||||| |||||| | ||| |||||||| || |||| ||| Sbjct 1050 AAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAACTACTGAT 991 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 ||||| |||||| ||| ||| || |||||| | |||||| | ||| ||||||| || Sbjct 990 CGTCGCCTTGGTAAGCTTTTACCTTACCAACAAGCTAATCAGACGCAAGCCCATTCTTAG 931 Query 181 GCGATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTTC 240 ||| | | || | | | ||||| | || |||| ||||||||| | Sbjct 930 GCGGT---TGTT---------ACCGTTTTACTCCTCAG-CA-TATGGGGTATTAGCAACC 885 Query 241 GTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCGC 300 ||||||| ||||| || ||| || |||||||| || ||| ||||||||||||||||| Sbjct 884 GTTTCCAGTTGTTATCCCCCTCCTAAGGGCAGGTT-CTTACGCGTTACTCACCCGTCCGC 826 Query 301 CACTA 305 ||||| Sbjct 825 CACTA 821 >seq142 Length=60166 Score = 165 bits (182), Expect = 2e-38 Identities = 144/178 (81%), Gaps = 1/178 (1%) Strand=Plus/Minus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 |||| |||||| | || |||||||| ||| || || |||||||||| | || | | |||| Sbjct 16335 GCTGGATCAGGCTCTCGCCCATTGTCCAAAATTCCTCACTGCTGCCGCTCGAAAGCGTCT 16276 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 ||||||||||||||||||| |||||| | ||| |||||||| || |||| |||| |||| Sbjct 16275 GGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGCTAAGGATCATCGG 16216 Query 127 CTTGG-TGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCAGCG 183 ||||| | ||| ||| || ||||||||||||||| ||||||| |||||| || || Sbjct 16215 CTTGGATAAGCTTTTACCTTACCAACTACCTAATCCTACGCGAGCTCATCTTACAACG 16158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 998393240832