Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq96 159 8e-37 seq142 149 1e-33 >seq96 Length=18243 Score = 159 bits (176), Expect = 8e-37 Identities = 151/190 (79%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 207 CCACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCA 266 ||||||||||||| || |||| | |||| | |||| ||||||| | | || |||| Sbjct 11270 CCACAGCTTCGGCAGACCGCTTA-GTCCCGTT-CATTTTCGGCGCAAGAACGCTCTACCA 11327 Query 267 GTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTA 326 ||||||||||||||||||||| ||||||||||||| | | || ||||| |||||||| | Sbjct 11328 GTGAGCTATTACGCACTCTTTAAAGGATGGCTGCTGCTAGGCAAACCTTCTGGTTGTTTC 11387 Query 327 CGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGG 386 ||| | || |||||| ||||| || || || ||||||||||||| ||||||||| Sbjct 11388 AGCATTCCTACCTCCTTTGCCACTTAGCGGTCATTTTGGGGCCTTAGCTGGTGATCTGGG 11447 Query 387 CTGTTTCCCT 396 |||||||||| Sbjct 11448 CTGTTTCCCT 11457 >seq142 Length=60166 Score = 149 bits (164), Expect = 1e-33 Identities = 138/175 (79%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 226 CTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCT 285 ||| ||||||| |||||| |||| || | || ||||||||||||||||||| ||| Sbjct 10381 CTTGAGCCCCGTTACATTTTCGGTGCACTTTAGCTAGACCAGTGAGCTATTACGCTTTCT 10322 Query 286 TTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTC 345 | ||||||||||||||||||||| |||||||||||||| || | ||||||||||| Sbjct 10321 TCAAAGGATGGCTGCTTCCAAGCCCACCTCCTGGTTGTCACTGCTAAATCACATCCTTTC 10262 Query 346 CCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 ||||| || | ||| || ||||||| | |||||||||| ||||||| ||| Sbjct 10261 CCACTAAGCAAATCTTTAAGGACCTTAGCGCACGATCTGGGCTTTTTCCCTTTCG 10207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177592027648