Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq42 212 1e-52 seq142 87.8 3e-15 >seq42 Length=3281 Score = 212 bits (234), Expect = 1e-52 Identities = 218/285 (76%), Gaps = 0/285 (0%) Strand=Plus/Minus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65 ||||||| |||||| ||||||| | | |||||| ||| ||||||| ||||||| || Sbjct 1456 GCTTTCGTCCCTCAGTGTCAGTTTCGGCCCAGCAGAGCGCTTTCGCCATCGGTGTTCTTC 1397 Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125 | ||||| ||||||||||||||||||| ||| |||| |||| || | | |||| || Sbjct 1396 CCGATATCAACGCATTTCACCGCTACACCGGGAGTTCCCTCTGCCCCTACCGTACTCTAG 1337 Query 126 AAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCT 185 | |||||| | ||| |||||| |||||| |||| ||| ||||| | Sbjct 1336 GTGAGAAGTTTCTACTGCTCTGACTGGGTTAAGCCCAGGTTTTTAACAGAAGACTTTCTC 1277 Query 186 TCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTA 245 ||| |||||| |||||||| |||||| | |||||||||||||||| || ||||||| Sbjct 1276 ACCCACCTACAGACCCTTTACGCCCAATCATTCCGGATAACGCTTGCATCCCCCGTATTA 1217 Query 246 CCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 ||||||||||||||||| ||||||||| |||||||| |||| || Sbjct 1216 CCGCGGCTGCTGGCACGGAGTTAGCCGATGCTTATTCTTCAGATA 1172 >seq142 Length=60166 Score = 87.8 bits (96), Expect = 3e-15 Identities = 79/98 (81%), Gaps = 1/98 (1%) Strand=Plus/Minus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 ||| |||| || |||||| |||||| | | || |||||||| ||| || ||||||||| Sbjct 16505 CCGTCTACGTGCTCTTTACGCCCAATCATTTCGAATAACGCTCGCCCCCCCCGTATTACC 16446 Query 248 GCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTC 285 ||||||||||||||| |||| |||| || ||||| || Sbjct 16445 GCGGCTGCTGGCACGGAGTTGGCCG-GGACTATTCATC 16409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 828794564367