Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq96 232 1e-58 seq142 172 9e-41 >seq96 Length=18243 Score = 232 bits (256), Expect = 1e-58 Identities = 214/270 (79%), Gaps = 1/270 (0%) Strand=Plus/Plus Query 7 GGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATG 66 ||||||| ||||||||| |||||| |||||| ||| | || ||| |||||| | Sbjct 8619 GGGCTTCCTACTTAGATGCTTTCAGCAGTTATCCGCTCCGCATTTGGCTACCCAGCGTTT 8678 Query 67 CAC-TTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAG 125 | | |||| | | ||||||| || || ||| |||| ||| ||||||||||||||| | Sbjct 8679 CCCGTTGGAACAAGAACTGGTAGACTAGGGGTGGGTCCTTCCAGGTCCTCTCGTACTATG 8738 Query 126 GACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACG 185 | |||| |||||| || |||| || |||||| ||||||||||||||| ||||| Sbjct 8739 AAAGGCTCTTCTCAATGCTCTACCGCCTACACCGGATATGGACCGAACTGTCTCACGACG 8798 Query 186 TTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACT 245 ||||||||||||||| ||| || |||| ||||||||||||||||||||||||||| |||| Sbjct 8799 TTCTGAACCCAGCTCACGTACCGCTTTCATGGGCGAACAGCCCAACCCTTGGGACGTACT 8858 Query 246 TCAGCCCCAGGATGAGACGAGCCGACATCG 275 | |||||||| || || |||||||||||| Sbjct 8859 ACCGCCCCAGGTTGCGATGAGCCGACATCG 8888 >seq142 Length=60166 Score = 172 bits (190), Expect = 9e-41 Identities = 198/260 (76%), Gaps = 6/260 (2%) Strand=Plus/Minus Query 16 GCTT-AGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGC-ACTTGG 73 |||| |||||| |||||| |||| || |||| ||||| ||||||| ||| ||| | Sbjct 14995 GCTTGAGATGCTTTCAGCAGTTATTTAATCTAAACGTAGCTACCCAGCTGTGCCACT--G 14938 Query 74 CAGT-ACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCT 132 || ||||||||| ||||||||||| || ||||||||||||||||| ||||| | | Sbjct 14937 TTGTGACAACTGGTAAACCAGAGGTTTATCATTCCCGGTCCTCTCGTACAAAGGAATGGT 14878 Query 133 CCTCTCAAATT-TCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGA 191 ||||||| || | ||| ||| | |||||| ||| ||||| || | ||| || | Sbjct 14877 TCTCTCAATTTGTAATACACCCGAAAAAGATAGGATCCGTACTGTTTCTCAACGCACTAA 14818 Query 192 ACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCC 251 ||||| ||| ||| || |||||| ||||||||||| ||||||||| |||| || |||| Sbjct 14817 ACCCAACTCACGTACCATTTTAATCGGCGAACAGCCGAACCCTTGGAACCTTCTGCAGCT 14758 Query 252 CCAGGATGAGACGAGCCGAC 271 ||||||| || ||| |||| Sbjct 14757 CCAGGATATGATGAGTCGAC 14738 Score = 98.7 bits (108), Expect = 2e-18 Identities = 100/129 (78%), Gaps = 1/129 (1%) Strand=Plus/Plus Query 16 GCTT-AGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGC 74 |||| |||||| |||||| |||| | |||| ||||| ||||||||||| ||| Sbjct 28399 GCTTGAGATGCTTTCAGCAGTTATTTAAACTAAACGTAGCTACCCAGCTATGCCATTGTT 28458 Query 75 AGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCC 134 ||||||||| ||||||||||| || ||||||||||||||||| ||||| || | | Sbjct 28459 GTGACAACTGGTAAACCAGAGGTTTATCATTCCCGGTCCTCTCGTACAAAGGAAAGGTTC 28518 Query 135 TCTCAAATT 143 |||||| || Sbjct 28519 TCTCAATTT 28527 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780794879172