Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq42 233 5e-59 seq142 176 1e-41 >seq42 Length=3281 Score = 233 bits (258), Expect = 5e-59 Identities = 252/331 (76%), Gaps = 12/331 (4%) Strand=Plus/Minus Query 6 TTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTG 65 |||||||||| ||||||||||| | ||| |||||| ||| | |||||||| ||||||||| Sbjct 1140 TTACAACCCGCAGGCCTTCTTCCTCCACACGGCATTGCTCCGTCAGGCTTTCGCCCATTG 1081 Query 66 TGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTG 125 | || ||||| ||||||||||| |||||| ||||||| |||||||||||| |||||||| Sbjct 1080 CGGAAGATTCCTCACTGCTGCCTTCCGTAGAAGTCTGGGCCGTGTCTCAGTCCCAGTGTG 1021 Query 126 GCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAA 185 |||| |||||||||||||||| ||| ||||||||||| ||| || ||||| |||| Sbjct 1020 GCTGATCATCCTCTCAGACCAACTACTGATCGTCGCCTTGGTAAGCTTTTACCTTACCAA 961 Query 186 CTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGGT 245 | |||||||| | | ||| | ||| || || || | ||| | Sbjct 960 CAAGCTAATCAGACGCAAGCCCATTC-TTAG--------GCGGTTGTTACCGT-TTTACT 911 Query 246 CTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCAG 305 | | | |||| ||||||||| |||||||||||| ||||||||||||| ||||| Sbjct 910 CCT--CAGCATATGGGGTATTAGCAACCGTTTCCAGTTGTTATCCCCCTCCTAAGGGCAG 853 Query 306 TTTCCCAGACATTACTCACCCGTCCGCCACT 336 ||| | | |||||||||||||||||||| Sbjct 852 GTTCTTACGCGTTACTCACCCGTCCGCCACT 822 >seq142 Length=60166 Score = 176 bits (194), Expect = 1e-41 Identities = 157/194 (81%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 5 TTTACAACCCGAAG-GCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCAT 63 ||||||||| | ||||||||||| || ||| || |||| |||||||| ||||||| Sbjct 16373 TTTACAACCAATTGAGCCTTCTTCATTCATGCGATATAGCTGGATCAGGCTCTCGCCCAT 16314 Query 64 TGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 123 ||| ||| ||||| |||||||||| | || | | |||||| |||||||||||| |||||| Sbjct 16313 TGTCCAAAATTCCTCACTGCTGCCGCTCGAAAGCGTCTGGGCCGTGTCTCAGTCCCAGTG 16254 Query 124 TGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGG-TGGGCCATTACCCCGC 182 |||||| |||||||||||||||||||| ||||| ||| || || | || ||||| | Sbjct 16253 TGGCTGATCATCCTCTCAGACCAGCTAAGGATCATCGGCTTGGATAAGCTTTTACCTTAC 16194 Query 183 CAACTAGCTAATCC 196 |||||| ||||||| Sbjct 16193 CAACTACCTAATCC 16180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222391724352