Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq42 320 5e-85 seq142 241 4e-61 >seq42 Length=3281 Score = 320 bits (354), Expect = 5e-85 Identities = 360/471 (76%), Gaps = 22/471 (5%) Strand=Plus/Plus Query 23 AGCGGCGGACGGGTGAGTAACGCGTGGGTAACCTGCCCTGTACACACGGATAACATACCG 82 || |||||||||||||||||||||| | |||||||||| | |||||||| | Sbjct 822 AGTGGCGGACGGGTGAGTAACGCGTAAG-AACCTGCCCTTAGGAGGGGGATAACAACTGG 880 Query 83 AAAGGTATGCTAATACGAGATAATATACTTTTATCGCATGGTAGAA--GTATCAAAGCTC 140 ||| | ||||||||| ||| | || | | ||| || ||| ||| | Sbjct 881 AAACGGTTGCTAATACCCCATA---TGCTGA----GGA--GTAAAACGGTAACAA----C 927 Query 141 CGGCGGTACAGGATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAG 200 || | || || || | | |||||||||||||| ||||||||||||| |||||||||| Sbjct 928 CGCC--TA-AGAATGGGCTTGCGTCTGATTAGCTTGTTGGTAAGGTAAAAGCTTACCAAG 984 Query 201 GCGACGATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCC 260 |||||||||||||| | |||||||| ||||| |||||| ||| |||||||||||| || Sbjct 985 GCGACGATCAGTAGTTGGTCTGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCC 1044 Query 261 AAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGC 320 | ||| |||||| ||||||||||| ||||| || | |||||||| ||||||||| | ||| Sbjct 1045 AGACTTCTACGGAAGGCAGCAGTGAGGAATCTTCCGCAATGGGCGAAAGCCTGACGGAGC 1104 Query 321 AACGCCGCGTGAGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAG-ATAA 379 || |||| ||| || |||||||| ||||| |||| || | ||| ||| |||| Sbjct 1105 AATGCCGTGTGGAGGAAGAAGGCCTGCGGGTTGTAATCTCCTTTTCTCGGAAAAGAATAA 1164 Query 380 -TGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGT 438 |||||||| ||| || |||| ||||||||| |||||||||||||||||||||||| Sbjct 1165 CTGACGGTATCTGAAGAATAAGCATCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGG 1224 Query 439 AGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGG 489 || || ||||||||||||||| | | ||||||||||||| |||||||| Sbjct 1225 GGGATGCAAGCGTTATCCGGAATGA-TTGGGCGTAAAGGGTCTGTAGGTGG 1274 >seq142 Length=60166 Score = 241 bits (266), Expect = 4e-61 Identities = 266/347 (77%), Gaps = 12/347 (3%) Strand=Plus/Plus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTA-CCAAGGCGACGATCAGTAGCCGA 218 ||||| |||||| ||||||||||||||| ||||| ||||| ||| |||| |||| | Sbjct 16174 CGCGTAGGATTAGGTAGTTGGTAAGGTAAAAGCTTATCCAAGCCGATGATCCTTAGCTGG 16233 Query 219 CCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCA 278 |||||||| ||||| |||||| ||| |||||||||||| ||| || | | || | |||| Sbjct 16234 TCTGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACGCTTTCGAGCGGCA 16293 Query 279 GCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATG 338 |||||| ||||| ||| ||||||||| | |||||||| |||| | ||| ||| || | Sbjct 16294 GCAGTGAGGAATTTTGGACAATGGGCGAGAGCCTGATCCAGCTATATCGCATGAATGAAG 16353 Query 339 AAGGC-CTTCGGGTCGTAAAGCTC-TGTCCTCAAGGAAGATAATGACGGTACTTGAGGAG 396 ||||| | ||| ||||| || | | ||| ||||| ||||| |||| ||| Sbjct 16354 AAGGCTCAATTGGTTGTAAAATTCATATTTTCATTTAAGATTATGAC----ATTGATGAG 16409 Query 397 --GA--AGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTT 452 || || |||||| |||| |||||||||||||||||||||||| |||||| |||||| Sbjct 16410 ATGAATAGTCCCGGCCAACTCCGTGCCAGCAGCCGCGGTAATACGGGGGGGGCGAGCGTT 16469 Query 453 ATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGT 499 || || ||| | | |||||||||| | ||||| ||||| |||||| Sbjct 16470 ATTCGAAATGA-TTGGGCGTAAAGAGCACGTAGACGGTTTTTTAAGT 16515 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497589861248