Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq42 260 3e-67 seq142 111 4e-22 >seq42 Length=3281 Score = 260 bits (288), Expect = 3e-67 Identities = 261/339 (77%), Gaps = 0/339 (0%) Strand=Plus/Plus Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64 ||| || |||| ||||||||| |||||||||||||||||||||||| || || ||| Sbjct 1176 TGAAGAATAAGCATCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGGGGATGCAAGC 1235 Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAA 124 |||||||||||| | |||||||||||||| |||||||| | ||||| || ||| Sbjct 1236 GTTATCCGGAATGATTGGGCGTAAAGGGTCTGTAGGTGGGTGAGAAAGTCTTCTGTTAAA 1295 Query 125 GGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCA 184 | |||| ||||| | | || | |||||| | ||||||| | | ||||||| Sbjct 1296 AACCTGGGCTTAACCCAGTCAGAGCAGTAGAAACTTCTCACCTAGAGTACGGTAGGGGCA 1355 Query 185 AGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAA 244 |||| ||| ||||||||||||||||||| ||||| ||| ||||||| ||||||| Sbjct 1356 GAGGGAACTCCCGGTGTAGCGGTGAAATGCGTTGATATCGGGAAGAACACCGATGGCGAA 1415 Query 245 GGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATT 304 ||| |||||| | | |||||||||||||| ||||||| ||||||| || ||||| Sbjct 1416 AGCGCTCTGCTGGGCCGAAACTGACACTGAGGGACGAAAGCTAGGGGAGCGAAAGGGATT 1475 Query 305 AGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTA 343 |||||||| ||||||| ||||||||||||| |||||| Sbjct 1476 AGATACCCCTGTAGTCCTAGCCGTAAACGATGGATACTA 1514 >seq142 Length=60166 Score = 111 bits (122), Expect = 4e-22 Identities = 130/174 (75%), Gaps = 4/174 (2%) Strand=Plus/Plus Query 166 CTAGAGTGCAGGAGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAG 225 ||||||| | || || ||||||||||||| | | | ||| |||| ||||| || Sbjct 16619 CTAGAGTAAATTAGAGGAAAGTGGAATTCCTGGAGGAAAGGTTAAATTTTATGATATCAG 16678 Query 226 GAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACTG--TAACTGACACTGAGGCTCGAAA 283 ||||||| ||| ||| |||| ||| || |||| | |||||| ||||| ||||| Sbjct 16679 GAGGAACGCCAAGAGCGTAGGCAACTTTCT--ACTGTTTTACTGACGTTGAGGTGCGAAA 16736 Query 284 GCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGA 337 || |||||| |||| ||||||||||||| |||||||| ||||| ||| |||| Sbjct 16737 GCATGGGGATCAAAGGGGATTAGATACCCCTGTAGTCCATGCCGTCAACTATGA 16790 Score = 109 bits (120), Expect = 1e-21 Identities = 84/100 (84%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 14 AGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGG 73 || |||||| |||| |||||||||||||||||||||||| |||||| |||||||| || Sbjct 16416 AGTCCCGGCCAACTCCGTGCCAGCAGCCGCGGTAATACGGGGGGGGCGAGCGTTATTCGA 16475 Query 74 AATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGT 113 ||| | ||||||||||| | ||||| ||||| |||||| Sbjct 16476 AATGATTGGGCGTAAAGAGCACGTAGACGGTTTTTTAAGT 16515 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203191854336