Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq96 192 2e-46 seq142 80.6 9e-13 >seq96 Length=18243 Score = 192 bits (212), Expect = 2e-46 Identities = 359/516 (70%), Gaps = 16/516 (3%) Strand=Plus/Minus Query 35 GACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAG 94 |||||||| || |||||||| |||||||||||||||| | ||||| || || || Sbjct 11767 GACCCGAACCCGGGTGATCTAACCATGGCCAGGATGAAACTTGGGTAAAACCAAGTGAAG 11708 Query 95 GTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTA 154 ||||||||| || |||||||||||| | ||||||| ||||| ||||||||||| || | Sbjct 11707 GTCCGAACCGACCGATGTTGAAAAATCGGCGGATGAGTTGTGGTTAGGGGTGAAATGCCA 11648 Query 155 AACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGC-CTCAAGTATC 213 | | |||| ||| ||||||| |||| |||||| || ||| || | || | Sbjct 11647 ATCGAACTCGGAGCTAGCTGGATCTCCCCGAAATGCGTTGAGGCGCAGCGGTTAACGACG 11588 Query 214 ACCATC--GGGGGTAGAGCACTGTTATGGCTAGGGGGTCATTGCGACTTACCAAACCATT 271 | | |||||| ||||||||| | | | ||| | | | ||||||| | | Sbjct 11587 GGCTGCCTAGGGGTAAAGCACTGTT-TCGGTGCGGGCTGCGAGAGCGGTACCAAATCGTA 11529 Query 272 GCAAACTCCGAATGC---GCATCAGTTTTACCG--CGGGAGTGAGGGCATGGGTGCTAAG 326 ||||||| |||| | |||| ||| ||| |||||| |||| | |||| Sbjct 11528 GCAAACTAAGAATACTAGGCATTGCTTT--CCGTTAACCAGTGAGACGGTGGGGGATAAG 11471 Query 327 GTCCGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAA 386 ||| | | | ||| || | || || | ||||||||||||| ||||||| ||||| Sbjct 11470 CTCCATCGTCAAAAGGGAAACAGCCCAGATCACCAGCTAAGGCCCCAAAATGACCGCTAA 11411 Query 387 GTTAAACTAACGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATT 446 || | || || || || |||| | ||| | || | ||| || | | |||||||| | Sbjct 11410 GT--GGCAAAGGAGGTAGGAATGCTGAAACAACCAGAAGGTTTGCCTAGCAGCAGCCA-T 11354 Query 447 CATTTAAAGAGTGCGTAACAGCTCACTAGTCGAGGAGTCGGGCGTGGATAATAATCGGGT 506 | |||||||||||||||| |||||||| || ||| || ||| || ||| | |||| Sbjct 11353 CCTTTAAAGAGTGCGTAATAGCTCACTGGTAGAGCGTTCTTGCGCCGAAAATGAACGGG- 11295 Query 507 ATTAAGTTGTCTACCGAAGCAGTGGG-ATCATTTAT 541 | |||| |||| ||||||| ||||| | |||||| Sbjct 11294 ACTAAGCGGTCTGCCGAAGCTGTGGGTAATATTTAT 11259 >seq142 Length=60166 Score = 80.6 bits (88), Expect = 9e-13 Identities = 86/114 (75%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 35 GACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAG 94 ||||||||||| |||||||| ||||| |||| ||||| |||||||| ||||| Sbjct 8538 GACCCGAAACCGGGTGATCTAGCCATGAGCAGGTTGAAGAAAGGGTAACACCTTTTGGAG 8597 Query 95 GTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAA 148 | |||||||||| ||| | || | |||||||| ||||| ||||||| || Sbjct 8598 GGCCGAACCCACGTCTGTGGCAATAGGCGGGGATGACTTGTGGTTAGGGGTAAA 8651 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689588561408