Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq96 113 8e-23 seq142 87.8 3e-15 >seq96 Length=18243 Score = 113 bits (124), Expect = 8e-23 Identities = 176/246 (72%), Gaps = 12/246 (5%) Strand=Plus/Minus Query 8 ATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCG 67 |||||| || ||| ||| | || ||||||||| ||| | | | ||| | ||| || Sbjct 12818 ATGGTGAATACCTAGGCATCCAAAGACGATGAAGGGCGTGGAAACCGACGAAACGCTTCG 12759 Query 68 GGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGG 127 |||| | ||||| | |||| || |||| |||||| ||| |||| ||| Sbjct 12758 AGGAGCTGG-AAACAAGCAATGATTCGAAGATCCCCGAATAGGGTAACCT----CTT--- 12707 Query 128 GTCATTGCATGCTGAATACATAGGTATGCAAAGCGA--ACGCGGCGAACTGAAACATCTA 185 || || | | ||||| ||||| | | |||| || || ||| ||| |||||||||| Sbjct 12706 GTACTTCCTTT-TGAATTCATAGA-AGGGAAAGAGATAACTCGGTGAATTGAAACATCTT 12649 Query 186 AGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGAT 245 |||||| | ||||||||||| ||| || ||||||| ||||| |||||||||| ||||| Sbjct 12648 AGTAGCCGGAGGAAAAGAAAGCAAACGCGATTCCCGTAGTAGCGGCGAGCGAACTGGGAC 12589 Query 246 GAGCCT 251 |||||| Sbjct 12588 GAGCCT 12583 >seq142 Length=60166 Score = 87.8 bits (96), Expect = 3e-15 Identities = 116/158 (73%), Gaps = 10/158 (6%) Strand=Plus/Plus Query 171 GAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGG 230 ||| |||||||||| |||| || ||||||| ||||||||||||||||| ||||||||| Sbjct 8039 GAATTGAAACATCTTAGTAACTAAAGGAAAAAAAATCAACCGAGATTCCGTAAGTAGTGG 8098 Query 231 CGAGCGAAATGGGATGAGCC---TTTACGAGATA----GTTGAATTGATAGTGGAA--TC 281 || |||| |||| || | ||| || | | || ||||| || | || || Sbjct 8099 TGAATGAAAGCGGATTAGGCCTGTTTTGGAAAAAATCTTTTTAATTG-TACTAAAAACTC 8157 Query 282 CTCTGGAAATAGGAGCCATAGCGGGTGATAGCCCCGTA 319 || |||||| | |||| || |||||| ||||||||| Sbjct 8158 CTTTGGAAAAGGTTGCCAAAGAGGGTGAAAGCCCCGTA 8195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 918393782432