Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq153 536 4e-150 seq96 77.0 1e-11 >seq153 Length=8666 Score = 536 bits (594), Expect = 4e-150 Identities = 385/438 (88%), Gaps = 13/438 (3%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| || ||| ||||||||||||||| |||| | ||||||||||||||||||| Sbjct 1660 CTTTTGTTCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTTATC 1719 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||| Sbjct 1720 TTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCCACCTGGATC 1779 Query 127 GGCCCGCG---AAGGA--CCTTAACGCCAGAAAAT-GGTCGGTGAAGACC-AGTTCCGCT 179 ||| ||| |||| ||||| || ||||| |||| | ||||| | |||| Sbjct 1780 GGCACGCCTAAAAGGCTGCCTTAGAGCTAGAAAGGAGGTCTG---AGACCTACTTCCAAC 1836 Query 180 TCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTC 239 | || || ||||||||| |||| | | |||||||||||||||| |||||||| |||| Sbjct 1837 TAATGGAATAAGTAAAATAACGTTGAAGGTAGTGGTATTTCACCGGCGCCGAA---GCTC 1893 Query 240 CCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAG 299 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1894 CCACTTATTCTACACCCCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAG 1953 Query 300 GGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATA 359 |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| Sbjct 1954 GGTCTTCTTTCCCCGCTGTTTCTTCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATA 2013 Query 360 GTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACG 419 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2014 GTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACG 2073 Query 420 AGGCATTTGGCTACCTTA 437 |||||||||||||||||| Sbjct 2074 AGGCATTTGGCTACCTTA 2091 Score = 179 bits (198), Expect = 1e-42 Identities = 104/106 (98%), Gaps = 1/106 (1%) Strand=Plus/Plus Query 435 TTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTG 494 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2503 TTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTG 2562 Query 495 ACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTT 540 ||||||||||||||||||||||||||||||| ||||||||| |||| Sbjct 2563 ACATTCAGAGCACTGGGCAGAAATCACATTGTGTCAACATC-CTTT 2607 >seq96 Length=18243 Score = 77.0 bits (84), Expect = 1e-11 Identities = 77/99 (78%), Gaps = 1/99 (1%) Strand=Plus/Plus Query 382 TCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAG 441 |||||| || ||| ||| ||||| | ||| |||| ||| |||| ||||||||| || Sbjct 10095 TCGTTACACCTTTCGTGCACGTCAGAACTTACCTGACAAGGAATTTCGCTACCTTAGGAC 10154 Query 442 AGTCATAGTTACTCCCGCCGTTTACCCGCGCTT-GGTTG 479 ||||||||||| |||||||| ||| | |||| ||||| Sbjct 10155 TGTCATAGTTACAGCCGCCGTTCACCGGGGCTTCGGTTG 10193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635188929696