Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq96 197 5e-48 seq142 104 8e-20 seq63 89.7 2e-15 >seq96 Length=18243 Score = 197 bits (218), Expect = 5e-48 Identities = 390/565 (69%), Gaps = 9/565 (2%) Strand=Plus/Plus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 |||||||||| |||| |||||||||||||||| ||| |||||||| | |||||| || Sbjct 9709 TCGACTTGTAGGTCTTGCAGTCAAGCTCCCTTATGCCTTTACACTCTTTAGCTGATTTCC 9768 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 |||| ||||||||||||||| | ||||||||| |||| ||| | | |||||||||| Sbjct 9769 GTCCAGCCTGAGGGAACCTTTGCACATCTCCGTTACCTTTTAGGA-GACGACCGCCCCAG 9827 Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCCAGA-TCATGGGCCAAGGTTAG-ATATCC 178 | ||||| |||||| | |||||| || || ||| || | |||| || | Sbjct 9828 TCAAACTGCCCACCTGAAACTGTCAAGCGTCCTGATTCAAGGATCGCCTTTAGAATTTTA 9887 Query 179 ACTACGGTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATA 238 || || ||||||| | ||| | | ||||| || | | | ||| Sbjct 9888 GCTTTTATC-GAGTGGTCTCTCACTGATGGCTCCAATTCCCCCGGAAAAGAACTCTCACC 9946 Query 239 GTCTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAG-GT 297 | |||||||||| || | ||| | ||| ||||| ||| |||| ||| ||| | Sbjct 9947 GCCTCCCACCTAGGCTGCGCAATAAAAGCTGAAATCCAATCCCAGGCTACAGTAAAGCTT 10006 Query 298 CCCGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCAC 357 | |||||||| |||| | | | | ||||||| || | | ||||||| Sbjct 10007 CATAGGGTCTTTCTGTCCAGGTGTAGGTAGTCCGCATCTTCACAGACATGTCTATTTCAC 10066 Query 358 CGGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTCGGAACTTA 416 || |||| | |||||||| | || ||||||| || |||||||| ||| ||||||| Sbjct 10067 CGAGCCTCTCTCCGAGACAGC-GCCCAGATCGTTACACCTTTCGTGCACGTCAGAACTTA 10125 Query 417 CCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGC 476 || ||||||||||||||||||||||||| || |||||||| |||||||| || ||||| Sbjct 10126 CCTGACAAGGAATTTCGCTACCTTAGGACTGTCATAGTTACAGCCGCCGTTCACCGGGGC 10185 Query 477 TTCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTC-TTAACCTTCCAGC 535 ||| || || || | | | ||| | | | | | || || ||||||| || Sbjct 10186 TTCGGTTGTAAGCTTC-CCTATCCCGTAGGATAAGTAACAAACTTCTTTTACCTTCCGGC 10244 Query 536 ACCGGGCAGGCGTCAGTCCGTATAC 560 || ||||||||||||| || |||| Sbjct 10245 ACTGGGCAGGCGTCAGCCCCCATAC 10269 >seq142 Length=60166 Score = 104 bits (114), Expect = 8e-20 Identities = 291/445 (65%), Gaps = 34/445 (8%) Strand=Plus/Minus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 |||||||||||||||| |||||| || ||||| | || | ||| | ||||| || || Sbjct 13309 TCGACTTGTAAGTCTCACAGTCAGGCAAGCTTGTACCATTGCGCTCTCTACCTGGTTTCC 13250 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 ||||||||||| ||||| | | |||||||| ||| ||| |||||||||| Sbjct 13249 GACCAGGCTGAGCTTACCTTCGCACATTTCCGTTACTCTTTAGGA-AATGACCGCCCCAG 13191 Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTT-AGATATCCA 179 | ||||||||||||| |||||| ||| || | | | |||| ||| | | Sbjct 13190 TCAAACTACCCACCAATCACTGTTCCC-------ATAAAGTG----GGTTGAGAAAGACG 13142 Query 180 CTACGGTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATAG 239 || || |||||||||||| | | || || | || Sbjct 13141 AAACCAAAAGGGTGGTATTTCAA----GGTT--------------GTAGCAAATTGCTA- 13101 Query 240 TCTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGT-C 298 ||||||||||| ||||||| | | | |||| | |||||||| ||||| | Sbjct 13100 -CTCCCACCTATTCTACACATTTGACTTCTTCTTTCAATGATAGGCTATAGTAAAGGTGC 13042 Query 299 CCGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACC 358 ||||||| |||| | || | | ||||||| || | | ||||||||| Sbjct 13041 ATAGGGTCTTACCGTCTTTTTTCGGGTACTCCGCATCTTCACGGAGAATTCAATTTCACT 12982 Query 359 GGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACC 418 | | | || | ||||||| ||| |||||| ||||||||| |||||| | | ||| Sbjct 12981 GAGTCCATGTTGGAGACAGTGGGGCAGTCGTGACGCCATTCATGCAGGGCACTAATTAGG 12922 Query 419 CGACAAGGAATTTCGCTACCTTAGG 443 | |||||||||||||||||||||| Sbjct 12921 TGTCAAGGAATTTCGCTACCTTAGG 12897 >seq63 Length=728494 Score = 89.7 bits (98), Expect = 2e-15 Identities = 108/146 (74%), Gaps = 1/146 (1%) Strand=Plus/Minus Query 3 GACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCCAA 62 |||||||||||||| |||||| || ||||| | || ||| | ||||| || || | Sbjct 82833 GACTTGTAAGTCTCACAGTCAGGCAAGCTTGTACCATTTTGCTCTCTACCTGGTTTCCGA 82774 Query 63 CCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAGTT 122 |||||||||| ||||| | || |||||||| ||| | | ||||||||||| Sbjct 82773 CCAGGCTGAGCTTACCTTCGCACGTTTCCGTTACTCTTTAGTA-AATGACCGCCCCAGTC 82715 Query 123 AAACTACCCACCAGGCACTGTCCCCA 148 || |||||||||| |||||| |||| Sbjct 82714 AAGCTACCCACCAATCACTGTTCCCA 82689 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1702388474752