Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq42 145 2e-32 seq142 132 1e-28 >seq42 Length=3281 Score = 145 bits (160), Expect = 2e-32 Identities = 208/294 (71%), Gaps = 18/294 (6%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 ||||||||||||||||||||||||||||||||| | || ||| ||| Sbjct 1212 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCTTCAGATAC---------------CGT 1168 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 || | || || | | ||||| || |||||| ||| || ||||| |||| ||| | Sbjct 1167 C--AGTTATTCTTTTCCGAGAAAAGGAGATTACAACCCGCAGG-CCTTCTTCCTCCACAC 1111 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | | ||| |||| || ||| |||||| || ||||||||||||||||| |||||| Sbjct 1110 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAGATTCCTCACTGCTGCCTTCCGTAG 1051 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 ||| ||| |||||||||||| ||| ||||| || | |||||||||| | ||| || Sbjct 1050 AAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAACTACTGAT 991 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAACGCATCCCCAT 294 ||| | || ||| || ||||| || || | ||||| ||||| ||||| Sbjct 990 CGTCGCCTTGGTAAGCTTTTACCTTACCAACAAGCTAATCAGACGCAAGCCCAT 937 >seq142 Length=60166 Score = 132 bits (146), Expect = 1e-28 Identities = 162/220 (74%), Gaps = 1/220 (0%) Strand=Plus/Minus Query 85 GAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCGT 144 ||| ||||||| | | || ||||| || |||| || | | ||||| |||| |||||| Sbjct 16377 GAATTTTACAACCAATTGAGCCTTCTTCATTCATGCGATATAGCTGGATCAGGCTCTCGC 16318 Query 145 CCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCC 204 |||||| |||| |||||||||||||||| | || | | || ||| |||||||||||| || Sbjct 16317 CCATTGTCCAAAATTCCTCACTGCTGCCGCTCGAAAGCGTCTGGGCCGTGTCTCAGTCCC 16258 Query 205 AATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGG-TGGGCCGTTACC 263 | ||||| || | |||||||||| | ||| ||| | |||| || | || ||||| Sbjct 16257 AGTGTGGCTGATCATCCTCTCAGACCAGCTAAGGATCATCGGCTTGGATAAGCTTTTACC 16198 Query 264 CCGCCTACTACCTAATGGAACGCATCCCCATCGTACACCG 303 || |||||||||| |||| | |||| |||| || Sbjct 16197 TTACCAACTACCTAATCCTACGCGAGCTCATCTTACAACG 16158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1068792764224