Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq386 131 1e-25 seq67 116 3e-21 >seq386 Length=203426 Score = 131 bits (144), Expect = 1e-25 Identities = 129/167 (77%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 66002 GGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACA 66061 |||||||||| ||||| ||||||||||||||| || ||||| ||| ||||| ||| Sbjct 96887 GGAAGGGCAATGGATGCCAGGTTGCAGACAGCTGATTCTTCAGGGCTGGTGTACTCCACA 96828 Query 66062 ATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGA 66121 || || ||||| ||||| ||||| |||||||||| || || ||||| |||||| Sbjct 96827 ATCTCAGTGCAGAGATTGCTGCACTTGATGGTGCCCAGGTTTTGCTGATTGGACTTGCGG 96768 Query 66122 TTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 ||||| |||||||||| |||||| || |||| |||||||| || Sbjct 96767 TTGCAGCTGTCCTTGTACAGCATGTATGGGTTGCCAGTCTCAACCTG 96721 >seq67 Length=277217 Score = 116 bits (128), Expect = 3e-21 Identities = 419/642 (65%), Gaps = 20/642 (3%) Strand=Plus/Plus Query 61300 TTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATC 61359 ||||| ||||||||||| || || |||||||| || |||||||||||| | || | Sbjct 72243 TTCTATGGCTTCCAGATAGCTATTGAGAATGTGCATAGTGAGATGTACAGTCTCCTGCTT 72302 Query 61360 GA-TACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAATGCCATCGAGACGAT 61418 || ||| || ||| ||| || | || | | ||||| | ||||| | || | Sbjct 72303 GACTAC-TATGTCAAGGACTCAGCACAGCGGCAGCATCTGTTCCAAGCCATTCACACAGT 72361 Query 61419 ACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTA-CAACGGCTA 61477 || ||||||| || ||||| |||||| | |||||| ||| | || | ||| Sbjct 72362 GCCATGTGTGAAGCACAAGGCGGAATGGGCCATGCGTTGGATTGGCAGCAGCACCAGCT- 72420 Query 61478 CATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGT 61537 ||| ||||| | ||| ||||| || || || | ||||| || | Sbjct 72421 ---TTGCAGAACGGCTAGTGGGCTTTGCTTGTGTGGAAGGAATCCACTTCAGCGGCAGTT 72477 Query 61538 TTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATG 61597 | | | ||||| ||| | ||||| || ||| | ||||| ||||| || |||||||||| Sbjct 72478 TCTGCTCCATCTTCTGGCTTAAGAAGCGAGGATTGATGCCAGGTCTCACATTCAGCAATG 72537 Query 61598 AGTTGAT-ATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGC 61656 ||||||| | || | || || ||| ||||| || ||||| ||||| | ||| | Sbjct 72538 AGTTGATCAGCAGG-GATGAAGGCTTGCATACAGACTTTGCATGCTTGCTGTACAATC-- 72594 Query 61657 TATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACT 61716 | ||| || | | || ||||| ||| || || || | || || || | Sbjct 72595 -AGCTGCAAAACAGGCTATCACAGGAGACTGTACATGCTATAGTGGGCGATGCAGTGAGG 72653 Query 61717 ATCGAACAGGAATTTCTGAC-TGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGG 61775 | || | || || ||| ||| || | || ||||| | || |||||| | Sbjct 72654 CTGGAGAATGAGTT-CTGTTGTGAGGCGCTCAGTGTGTCACTGGTTGGAATGAATGCAGA 72712 Query 61776 ACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGATTTGGG-TATGA 61834 || ||||| ||||| || || ||| || ||||| |||||| | | |||||| ||||| Sbjct 72713 GCTGATGTCACAGTACATCAGATATGTGGCAGACCGCCTGTTGATAGCTTTGGGGTATGA 72772 Query 61835 --AGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGG 61892 ||| ||| ||| | | ||||| ||||| | ||||| ||||| || || | || Sbjct 72773 CAAGC---TCTTCAATGCCAGCAACCCCTTTGACTGGATGGAGATGATCTCTCTACAAGG 72829 Query 61893 CAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCAACG 61934 |||||| || || || |||| | || || ||||||||||| Sbjct 72830 CAAGACCAACTTCTTTGAGAGGAGAGTTGGTGACTATCAACG 72871 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397564719691280