Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= NC_031903.1 Length=172345 Score E Sequences producing significant alignments: (Bits) Value seq26 700 0.0 seq7 504 8e-138 seq17 89.7 6e-13 >seq26 Length=15232 Score = 700 bits (776), Expect = 0.0 Identities = 748/985 (76%), Gaps = 2/985 (0%) Strand=Plus/Plus Query 159803 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTCCTG 159862 || || |||||||||||||| || | ||||| |||| | |||||||| || || | Sbjct 1237 TTTTGTGAGTGGGTAACTTCAACTGAAAACCGTATCTACATTGGTTGGTTTGGTGTTTTA 1296 Query 159863 ATGATCCCAACTCTGTTGGCAGCAACTATCTG-CTTCATCGTCGCCTTCATCGCTGCTCC 159921 |||||||| ||||| || | ||||| | ||| || || | || || | || ||||| Sbjct 1297 ATGATCCCTACTCTTTTAACTGCAAC-AACTGTGTTTATTATTGCATTTGTAGCAGCTCC 1355 Query 159922 CCCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTACGGTAACAA 159981 |||||||||||||| || || ||||| || || ||||||| || ||||||| ||||| Sbjct 1356 TCCTGTGGACATCGACGGTATTCGTGAGCCAGTGTCTGGTTCCCTGTTGTACGGAAACAA 1415 Query 159982 CATCATCTCTGGTGCAGTTGTTCCCTCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 160041 ||| ||||||||||| |||||||| |||| || ||||||||| | |||||||| || || Sbjct 1416 CATTATCTCTGGTGCTGTTGTTCCTACTTCAAATGCAATTGGTTTACACTTCTACCCAAT 1475 Query 160042 TTGGGAAGCCGCATCGCTCGACGAGTGGCTCTATAACGGTGGTCCTTTCCAACTCGTAGT 160101 |||||||| || || | || |||||| | || ||||||||||||| |||| | || || Sbjct 1476 CTGGGAAGCAGCTTCTTTAGATGAGTGGTTATACAACGGTGGTCCTTACCAATTAGTTGT 1535 Query 160102 CTTCCACTTCCTGATCGGCATCTATGCCTATATGGGTCGTGAGTGGGAACTCTCTTACCG 160161 | |||||| | | || | | | ||| ||||| ||||| ||||| || |||| ||| Sbjct 1536 ATGCCACTTTTTCTTAGGTGTATGTTGCTACATGGGGCGTGAATGGGAGCTTTCTTTCCG 1595 Query 160162 TCTCGGTATGCGTCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCTGCTGCTTCTGC 160221 | | |||||||| || ||||| ||| || |||||||| ||||| || |||||| |||| Sbjct 1596 TTTAGGTATGCGCCCTTGGATTGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGC 1655 Query 160222 TGTATTCCTCGTCTACCCCTTCGGTCAGGGTTCTTTCTCCGATGCTATGCCTCTTGGTAT 160281 ||| ||| | ||||||| ||||||| || ||||| || | |||||| | ||||| Sbjct 1656 TGTGTTCATTATCTACCCTATCGGTCAAGGGTCTTTTAGTGACGGTATGCCCTTAGGTAT 1715 Query 160282 CTCTGGTACTTTTAACTATATGCTTGTATTCCAAGCAGAACACAATATCCTTATGCATCC 160341 ||| ||||||||||||| |||| ||||||||||||| || ||||| ||| | ||||| || Sbjct 1716 CTCAGGTACTTTTAACTTTATGATTGTATTCCAAGCTGAGCACAACATCTTAATGCACCC 1775 Query 160342 GTTCCACATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTGTTCTCTGCTATGCATGG 160401 ||||||||| | |||||||| || ||||| ||||| ||||| ||||||||||||||||| Sbjct 1776 TTTCCACATGTTAGGTGTTGCAGGTGTATTTGGTGGTTCTCTTTTCTCTGCTATGCATGG 1835 Query 160402 ATCTCTGGTTACTTCTAGTCTCGTCAGAGAGACGACAGAAACTGAGTCCCAGAACTATGG 160461 || | || ||||| | || | || || || || | | || ||| | || Sbjct 1836 TTCATTAGTAACTTCATCATTAATCCGTGAAACAACTGAGAACCAATCTGCTAACGAAGG 1895 Query 160462 TTACAAGTTCGGTCAAGAGGAAGAGACTTACAACATCGTCGCAGCACATGGCTACTTCGG 160521 |||||| ||||||||||| ||||| ||||||||||| || || || || || ||||| || Sbjct 1896 TTACAAATTCGGTCAAGAAGAAGAAACTTACAACATTGTTGCTGCGCACGGTTACTTTGG 1955 Query 160522 TCGTTTGATCTTCCAATATGCATCCTTTAACAACTCACGCTCTCTGCACTTCTTCCTCGC 160581 |||||||| |||||||| || || || ||||||||||| ||| | ||||||||| | || Sbjct 1956 GCGTTTGATTTTCCAATACGCTTCTTTCAACAACTCACGTTCTTTACACTTCTTCTTAGC 2015 Query 160582 TGCTTGGCCTGTTGTTGGAATCTGGTTCACTGCCCTTGGTGTTTCTACCATGGCATTCAA 160641 ||| ||||| || || || |||||||| ||||| | ||| | || || |||||||| || Sbjct 2016 TGCATGGCCAGTAGTAGGGATCTGGTTTACTGCTTTAGGTATATCAACTATGGCATTTAA 2075 Query 160642 TCTCAATGGTTTCAACTTCAACCAGTCCATCTTGGACAACCAAGGACAAGTTCTGAACAC 160701 || || ||||||||||| ||||| || | | ||| ||||| | || | ||||| Sbjct 2076 CCTAAACGGTTTCAACTTTAACCAATCAGTTGTAGACTCTCAAGGTCGTGTAATTAACAC 2135 Query 160702 TTGGGCAGACGTGCTTAACCGCGCTGGTCTGGGCATGGAAGTCATGCACGAGCGTAACGC 160761 ||||| ||| | | ||||| ||| || || ||||| || |||||||| |||||||| Sbjct 2136 ATGGGCTGACATTATCAACCGTGCTAACCTAGGTATGGAGGTAATGCACGAACGTAACGC 2195 Query 160762 TCACAACTTCCCTCTCGACCTTGCT 160786 |||||||||||| || ||| | ||| Sbjct 2196 TCACAACTTCCCACTTGACTTAGCT 2220 >seq7 Length=22195 Score = 504 bits (558), Expect = 8e-138 Identities = 715/1002 (71%), Gaps = 15/1002 (1%) Strand=Plus/Plus Query 161542 CGAGATCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTT 161601 || || ||||| |||||||| || ||||| || | | || ||||| || || |||||| Sbjct 4138 CGCGACCGTTTTGTTTTTGTAGGTTGGTCAGGTTTATTACTCTTTCCTACAGCATATCTT 4197 Query 161602 GCTATTGGCGGTTGGCTTACTGGCACGACTTTCGCTACGAGCTGGTATACCCATGGACTC 161661 ||| | || || ||| | ||||| | ||||| | || |||||||| || || | Sbjct 4198 GCTTTAGGTGGATGGTTAACTGGGATTACTTTTGTAACTTCTTGGTATACTCACGGTTTA 4257 Query 161662 GC---TAGTTCCTATCTTGAGGGTGCAAATTTTCTTACAGCGGCAGTTAGCACTCCAGCT 161718 || ||||| | || || ||| ||||| | || || |||||| |||||||| Sbjct 4258 GCAACTAGTTTC---CTAGAAGGTTGTAATTTCTTAACTGCTGCAGTTTCAACTCCAGCA 4314 Query 161719 GACGCTATGGGTCATTCTCTTCTTCTTCTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTC 161778 || ||||||||||||| | | |||| ||||| || || |||||| ||||| Sbjct 4315 AACAGTATGGGTCATTCTTTATTGTTTCTTTGGGGACCAGAAGCTCAATCTGATTTTACT 4374 Query 161779 AGGTGGATCCAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCACGGGGCTTTCGCTCTG 161838 | ||| | ||| | || || || ||| ||||| || || || || ||||| ||| | Sbjct 4375 CGTTGGTTTCAATTAGGCGGGCTTTGGGCATTTGTAGCTCTTCATGGAGCTTTTGCTTTA 4434 Query 161839 ATTGGATTCATGCTTCGTCAGTTTGAACTTGCTCGTCTTATCGGTA----TCCGTCCTTA 161894 ||||| || ||| | || || |||||| |||||||| || ||| | |||||||| Sbjct 4435 ATTGGTTTTATGTTACGCCAATTTGAAATTGCTCGT----TCAGTAAGACTTCGTCCTTA 4490 Query 161895 CAATGCTATTGCTTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTTCTCATATATCC 161954 |||||||||||| || || | ||||||||||||||||| || ||| | || || || Sbjct 4491 CAATGCTATTGCGTTTTCAGCACCTATTGCTGTTTTTGTTTCTGTTTTTTTAATTTACCC 4550 Query 161955 TCTGGGACAGTCGTCCTGGTTCTTCGCGCCATCGTTTGGGGTTGCCGCTATTTTCAGGTT 162014 | || ||||| ||||| || || || ||||| |||| | || || | || Sbjct 4551 GTTAGGTCAGTCTGGTTGGTTTTTTGCTCCTAGTTTTGGTATTGCTTCAATCTTTCGATT 4610 Query 162015 CTTACTTTTCCTACAAGGTTTCCACAATTGGACGCTTAATCCGTTCCACATGATGGGTGT 162074 | | ||||| | ||||| |||||||| ||||| | || || |||||||||||||| || Sbjct 4611 CATTCTTTTTTTCCAAGGATTCCACAACTGGACTTTAAACCCTTTCCACATGATGGGAGT 4670 Query 162075 CGCAGGTATCTTGGGTGGTGCTTTGCTCTCTGCTATTCACGGTGTGACTGTTGAAAACAC 162134 || ||| | || |||| ||||||||| | ||| |||||||||| |||||||||||||| Sbjct 4671 AGCTGGTGTATTAGGTGCTGCTTTGCTTTGTGCGATTCACGGTGCAACTGTTGAAAACAC 4730 Query 162135 GCTCTACCAAGATGGTGAACAAGCAAATACTTTCAAGGCTTTTGACTCTACGCAAGAGGA 162194 || | |||||||||| ||||| |||||| || ||| || | || |||| || Sbjct 4731 TCTTTTTGAAGATGGTGATGGTGCAAACACTTTCCGTGCATTTAACCCAACTCAAGCAGA 4790 Query 162195 GGAGACTTACTCGATGGTTACTGCGAACCGTTTCTGGTCACAGATCTTCGGTATTGCTTT 162254 || || ||||| | || || || || ||||||||||| || ||||| ||| | ||||| Sbjct 4791 AGAAACGTACTCTTTCGTGACAGCTAATCGTTTCTGGTCTCAAATCTTTGGTGTAGCTTT 4850 Query 162255 TAGTAATAAGCGTTGGTTGCATTTCTTTATGCTCTTCGTTCCCGTCATGGGTCTCTGGAC 162314 | || || || ||| | || || |||||| | || || || || | ||| | |||| Sbjct 4851 TTCAAACAAACGATGGCTTCACTTTTTTATGTTATTTGTGCCAGTAACTGGTTTATGGAT 4910 Query 162315 AAGTTCTATCGGTATTATTGGACTCGCTCTTAATCTTCGTGCTTACGACTTTGTATCTCA 162374 ||| | | ||| || | || | || | ||||| || |||||||| || |||||||| Sbjct 4911 GAGTGCACTTGGTGTTGTAGGTTTAGCATTAAATCTACGAGCTTACGATTTCGTATCTCA 4970 Query 162375 GGAGATTCGTGCAGCGGAGGATCCTGAATTTGAAACCTTCTACACCAAGAATATCCTCTT 162434 || ||||||||||| || |||||||||||||| || || ||||| || || || || || Sbjct 4971 AGAAATTCGTGCAGCAGAAGATCCTGAATTTGAGACTTTTTACACAAAAAACATTCTTTT 5030 Query 162435 GAATGAAGGTCTTCGTGCATGGTTGGCACCAGTTGATCAACCGCATGAGAACTTTGTATT 162494 || |||||| ||||||||||| |||| | ||||| || ||||| || ||||||| Sbjct 5031 AAACGAAGGTATTCGTGCATGGATGGCTGCTCAAGATCAGCCACATGAAAAAATTGTATT 5090 Query 162495 CCCTGAGGAAGTTCTGCCTAGAGGTAACGCACTGTGAATGGT 162536 ||||||||| || | || | || ||||| || | |||||| Sbjct 5091 CCCTGAGGAGGTATTACCACGTGGAAACGCTCT-TTAATGGT 5131 >seq17 Length=65237 Score = 89.7 bits (98), Expect = 6e-13 Identities = 78/97 (80%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 160129 CTATATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCCTGGATCTGTGT 160188 ||| |||| |||||| ||||||||||||| |||| | ||||||||| | ||||| ||| Sbjct 34150 CTACATGGTTCGTGAATGGGAACTCTCTTCCCGTTTAGGTATGCGTACTTGGATTGCTGT 34091 Query 160189 TGCATACTCTGCTCCAGTCGCTGCTGCTTCTGCTGTA 160225 | |||| ||| ||||| || |||||| |||||||| Sbjct 34090 CCCCTACTATGCACCAGTTGCAGCTGCTACTGCTGTA 34054 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 551371333980600