Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= NC_031906.1 Length=198190 Score E Sequences producing significant alignments: (Bits) Value seq26 742 0.0 seq7 515 5e-141 seq17 84.2 3e-11 >seq26 Length=15232 Score = 742 bits (822), Expect = 0.0 Identities = 755/979 (77%), Gaps = 4/979 (0%) Strand=Plus/Plus Query 188851 TTCTGCGAATGGGTCACCTCTACTAACAACCGTCTGTATGTCGGTTGGTTCGGTGTCCTG 188910 || || || ||||| || || ||| | |||||| | || | |||||||| ||||| | Sbjct 1237 TTTTGTGAGTGGGTAACTTCAACTGAAAACCGTATCTACATTGGTTGGTTTGGTGTTTTA 1296 Query 188911 ATGATCCCTACGCTTCTCGCTGCAACCATCTG-CTTCATCGTCGCCTTTGTCGCTGCACC 188969 ||||||||||| ||| | |||||| || ||| || || | || ||||| || || || Sbjct 1297 ATGATCCCTACTCTTTTAACTGCAA-CAACTGTGTTTATTATTGCATTTGTAGCAGCTCC 1355 Query 188970 CCCTGTAGACATTGATGGCATCCGCGAACCCGTCGCTGGTTCACTCATGTATGGAAACAA 189029 ||||| ||||| || || || || || || || ||||||| || |||| |||||||| Sbjct 1356 TCCTGTGGACATCGACGGTATTCGTGAGCCAGTGTCTGGTTCCCTGTTGTACGGAAACAA 1415 Query 189030 CATCATCTCTGGTGCTGTTGTCCCTTCATCCAACGCAATTGGTCTTCACTTCTACCCCAT 189089 ||| ||||||||||||||||| ||| | || || ||||||||| | ||||||||||| || Sbjct 1416 CATTATCTCTGGTGCTGTTGTTCCTACTTCAAATGCAATTGGTTTACACTTCTACCCAAT 1475 Query 189090 CTGGGAAGCCGCCTCACTCGATGAGTGGCTCTACAACGGTGGTCCTTTCCAACTGGTAGT 189149 ||||||||| || || | ||||||||| | |||||||||||||||| |||| | || || Sbjct 1476 CTGGGAAGCAGCTTCTTTAGATGAGTGGTTATACAACGGTGGTCCTTACCAATTAGTTGT 1535 Query 189150 CTTCCACTTCCTCATCGGCATCTACGCCTACATGGGTCGTGAGTGGGAACTCTCTTACCG 189209 | |||||| || | || | | ||||||||| ||||| ||||| || |||| ||| Sbjct 1536 ATGCCACTTTTTCTTAGGTGTATGTTGCTACATGGGGCGTGAATGGGAGCTTTCTTTCCG 1595 Query 189210 TCTCGGTATGCGTCCTTGGATCTGC-ATTGCTTACTCTGCACCTGTTGCAGCAGCATCCG 189268 | | |||||||| |||||||| ||| | |||||||||||||| |||||||| || | | Sbjct 1596 TTTAGGTATGCGCCCTTGGAT-TGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTG 1654 Query 189269 CAGTCTTTCTGGTCTATCCTTTTGGTCAAGGTTCTTTCTCTGACGCAATGCCCTTGGGTA 189328 | || || | |||| ||| | |||||||| ||||| ||||| |||||||| |||| Sbjct 1655 CTGTGTTCATTATCTACCCTATCGGTCAAGGGTCTTTTAGTGACGGTATGCCCTTAGGTA 1714 Query 189329 TCAGTGGAACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACC 189388 || || || || |||| ||| |||| |||||||| |||||||||||| | ||||||| Sbjct 1715 TCTCAGGTACTTTTAACTTTATGATTGTATTCCAAGCTGAGCACAACATCTTAATGCACC 1774 Query 189389 CCTTCCACATGCTGGGAGTCGCAGGTGTCTTCGGTGGTTCACTGTTCTCCGCAATGCATG 189448 | ||||||||| | || || |||||||| || |||||||| || ||||| || ||||||| Sbjct 1775 CTTTCCACATGTTAGGTGTTGCAGGTGTATTTGGTGGTTCTCTTTTCTCTGCTATGCATG 1834 Query 189449 GTTCACTCGTTACCTCTTCACTGGTTCGTGAAACCACTGAAACCGAGTCCCAGAACTATG 189508 ||||| | || || || ||| | | |||||||| ||||| | | | || ||| | | Sbjct 1835 GTTCATTAGTAACTTCATCATTAATCCGTGAAACAACTGAGAACCAATCTGCTAACGAAG 1894 Query 189509 GTTACAAGTTTGGACAAGAAGAAGAAACGTACAACATCGTTGCTGCTCATGGATATTTCG 189568 ||||||| || || |||||||||||||| |||||||| |||||||| || || || || | Sbjct 1895 GTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATTGTTGCTGCGCACGGTTACTTTG 1954 Query 189569 GTCGTCTTATCTTCCAATATGCATCGTTCAACAACTCCCGTTCACTTCACTTCTTCCTCG 189628 | ||| | || |||||||| || || ||||||||||| ||||| | ||||||||| | | Sbjct 1955 GGCGTTTGATTTTCCAATACGCTTCTTTCAACAACTCACGTTCTTTACACTTCTTCTTAG 2014 Query 189629 CTGCCTGGCCAGTCGTGGGTATCTGGTTTACCGCCCTCGGCGTCAGCACCATGGCATTCA 189688 |||| |||||||| || || ||||||||||| || | || | || |||||||| | Sbjct 2015 CTGCATGGCCAGTAGTAGGGATCTGGTTTACTGCTTTAGGTATATCAACTATGGCATTTA 2074 Query 189689 ACCTCAATGGGTTCAACTTCAATCAATCCATTCTTGATGGTCAAGGTCGTGTTCTGAACA 189748 |||| || || |||||||| || ||||| || | || |||||||||||| | |||| Sbjct 2075 ACCTAAACGGTTTCAACTTTAACCAATCAGTTGTAGACTCTCAAGGTCGTGTAATTAACA 2134 Query 189749 CATGGGCAGACGTTCTCAACCGTGCTGGTCTTGGTATGGAAGTCATGCATGAGCGTAACG 189808 ||||||| ||| || ||||||||||| || |||||||| || ||||| || ||||||| Sbjct 2135 CATGGGCTGACATTATCAACCGTGCTAACCTAGGTATGGAGGTAATGCACGAACGTAACG 2194 Query 189809 CTCACAACTTCCCTCTTGA 189827 ||||||||||||| ||||| Sbjct 2195 CTCACAACTTCCCACTTGA 2213 >seq7 Length=22195 Score = 515 bits (570), Expect = 5e-141 Identities = 726/1017 (71%), Gaps = 2/1017 (0%) Strand=Plus/Plus Query 189984 TGGTTTGACATCCTTGATGACTGGCTTAAACGAGATCGCTTTGTCTTTGTGGGTTGGTCT 190043 |||||||| | | ||||| ||| | || || || ||||| ||||| |||||||| Sbjct 4108 TGGTTTGATACAGTAGATGATTGGGTACGCCGCGACCGTTTTGTTTTTGTAGGTTGGTCA 4167 Query 190044 GGATTACTTCTTTTTCCCACTGCTTATCTCGCAATTGGTGGCTGGCTTACTGGCACGACG 190103 || ||| | || ||||| || || ||||| || | ||||| ||| | ||||| | || Sbjct 4168 GGTTTATTACTCTTTCCTACAGCATATCTTGCTTTAGGTGGATGGTTAACTGGGATTACT 4227 Query 190104 TTTGCTACAAGCTGGTACACCCACGGACTCGCAAGTAGTTACCTTGAGGGTGCTAATTTT 190163 |||| || ||||| || ||||| | |||| ||||| ||| || ||| |||||| Sbjct 4228 TTTGTAACTTCTTGGTATACTCACGGTTTAGCAACTAGTTTCCTAGAAGGTTGTAATTTC 4287 Query 190164 CTTACAGCGGCTGTGTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGG 190223 | || || || || ||||| || || | ||||||||||||| | | | |||||| Sbjct 4288 TTAACTGCTGCAGTTTCAACTCCAGCAAACAGTATGGGTCATTCTTTATTGTTTCTTTGG 4347 Query 190224 GGTCCTGAATCTCAAGGCGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGGCTTTT 190283 || || ||| ||||| ||||| | ||| | ||| | || || || ||||| ||| Sbjct 4348 GGACCAGAAGCTCAATCTGATTTTACTCGTTGGTTTCAATTAGGCGGGCTTTGGGCATTT 4407 Query 190284 GTGGCGCTCCACGGGGCTTTCGCTCTAATTGGATTCATGCTTCGTCAGTTTGAACTGGCA 190343 || || || || || ||||| ||| ||||||| || ||| | || || |||||| | || Sbjct 4408 GTAGCTCTTCATGGAGCTTTTGCTTTAATTGGTTTTATGTTACGCCAATTTGAAATTGCT 4467 Query 190344 CGTCTCA-TCGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTT 190402 ||| ||| | | | ||||||||||||||||||||||| || | ||||| |||||||| Sbjct 4468 CGT-TCAGTAAGACTTCGTCCTTACAATGCTATTGCGTTTTCAGCACCTATTGCTGTTTT 4526 Query 190403 TGTTAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTCTTCGCGCCATCCTT 190462 |||| || ||| | || ||||| | ||||| || ||||||| || || || || Sbjct 4527 TGTTTCTGTTTTTTTAATTTACCCGTTAGGTCAGTCTGGTTGGTTTTTTGCTCCTAGTTT 4586 Query 190463 CGGTGTGGCAGCGATCTTCCGCTTCCTCCTCTTCTTGCAGGGCTTCCATAACTGGACGCT 190522 ||| | || | ||||| || ||| | || || || || || ||||| |||||||| | Sbjct 4587 TGGTATTGCTTCAATCTTTCGATTCATTCTTTTTTTCCAAGGATTCCACAACTGGACTTT 4646 Query 190523 GAACCCCTTCCACATGATGGGTGTTGCAGGTATCCTGGGAGGAGCACTACTGTCAGCAAT 190582 ||||| |||||||||||||| || || ||| | | || | || | || | || || Sbjct 4647 AAACCCTTTCCACATGATGGGAGTAGCTGGTGTATTAGGTGCTGCTTTGCTTTGTGCGAT 4706 Query 190583 CCATGGTGTGACTGTAGAGAATACTTTGTATGAAGATGGTGAACAAGCAAACACGTTTAA 190642 || |||| ||||| || || ||| | | |||||||||||| |||||||| || Sbjct 4707 TCACGGTGCAACTGTTGAAAACACTCTTTTTGAAGATGGTGATGGTGCAAACACTTTCCG 4766 Query 190643 AGCATTCGACTCTACACAAGAGGAAGAGACCTATTCGATGGTCACTGCCAACCGTTTCTG 190702 ||||| || | || |||| ||||| || || || | || || || || |||||||| Sbjct 4767 TGCATTTAACCCAACTCAAGCAGAAGAAACGTACTCTTTCGTGACAGCTAATCGTTTCTG 4826 Query 190703 GTCTCAAATCTTTGGTGTTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTTATGCTCTT 190762 |||||||||||||||||| || || || || | ||| | || || |||||| | || Sbjct 4827 GTCTCAAATCTTTGGTGTAGCTTTTTCAAACAAACGATGGCTTCACTTTTTTATGTTATT 4886 Query 190763 TGTTCCTGTTATGGGTCTGTGGACTTCTTCCATCGGTATTATTGGTCTTGCTCTCAACCT 190822 ||| || || | ||| | |||| | | | ||| || | ||| | || | || || Sbjct 4887 TGTGCCAGTAACTGGTTTATGGATGAGTGCACTTGGTGTTGTAGGTTTAGCATTAAATCT 4946 Query 190823 TCGTGCTTATGACTTTGTATCCCAAGAGATCAGAGCAGCAGAAGATCCAGAGTTCGAGAC 190882 || ||||| || || ||||| ||||| || | |||||||||||||| || || ||||| Sbjct 4947 ACGAGCTTACGATTTCGTATCTCAAGAAATTCGTGCAGCAGAAGATCCTGAATTTGAGAC 5006 Query 190883 TTTTTACACAAAAAATATACTTTTGAATGAAGGTCTTCGTTCATGGTTGGCACCTGTTGA 190942 ||||||||||||||| || ||||| || |||||| ||||| ||||| |||| || || Sbjct 5007 TTTTTACACAAAAAACATTCTTTTAAACGAAGGTATTCGTGCATGGATGGCTGCTCAAGA 5066 Query 190943 TCAACCCCATGAGAATTTTGTATTTCCAGAAGAAGTATTGCCAAGAGGCAACGCTCT 190999 ||| || ||||| || ||||||| || || || ||||| ||| | || |||||||| Sbjct 5067 TCAGCCACATGAAAAAATTGTATTCCCTGAGGAGGTATTACCACGTGGAAACGCTCT 5123 >seq17 Length=65237 Score = 84.2 bits (92), Expect = 3e-11 Identities = 73/88 (83%), Gaps = 2/88 (2%) Strand=Plus/Minus Query 189177 CTACATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCTTGGATCTGC-A 189235 |||||||| |||||| ||||||||||||| |||| | ||||||||| ||||||| ||| Sbjct 34150 CTACATGGTTCGTGAATGGGAACTCTCTTCCCGTTTAGGTATGCGTACTTGGAT-TGCTG 34092 Query 189236 TTGCTTACTCTGCACCTGTTGCAGCAGC 189263 | | |||| |||||| |||||||| || Sbjct 34091 TCCCCTACTATGCACCAGTTGCAGCTGC 34064 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634074634098000