Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= NC_031922.1 Length=174830 Score E Sequences producing significant alignments: (Bits) Value seq26 823 0.0 seq7 533 2e-146 >seq26 Length=15232 Score = 823 bits (912), Expect = 0.0 Identities = 779/989 (79%), Gaps = 4/989 (0%) Strand=Plus/Plus Query 160562 TTGGGAACAATTCTGCGAGTGGGTAACTTCTACAAACAATCGTCTTTACGTCGGTTGGTT 160621 ||||| || || || |||||||||||||| || | || ||| | ||| | |||||||| Sbjct 1227 TTGGGCACGCTTTTGTGAGTGGGTAACTTCAACTGAAAACCGTATCTACATTGGTTGGTT 1286 Query 160622 CGGTGTGCTGATGATCCCAACTCTGTTGGCAGCAACCGTCTG-CTTTATTACTGCGTTCG 160680 ||||| | |||||||| ||||| || | |||| | ||| ||||||| ||| || | Sbjct 1287 TGGTGTTTTAATGATCCCTACTCTTTTAACTGCAA-CAACTGTGTTTATTATTGCATTTG 1345 Query 160681 TTGCTGCTCCCCCCGTGGACATCGACGGTATCCGTGAACCCGTTGCTGGTTCACTGATGT 160740 | || ||||| || ||||||||||||||||| ||||| || || ||||||| ||| ||| Sbjct 1346 TAGCAGCTCCTCCTGTGGACATCGACGGTATTCGTGAGCCAGTGTCTGGTTCCCTGTTGT 1405 Query 160741 ATGGAAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGTCTTCACT 160800 | ||||||||||| ||||||||||| ||||||||| |||| || ||||||||| | |||| Sbjct 1406 ACGGAAACAACATTATCTCTGGTGCTGTTGTTCCTACTTCAAATGCAATTGGTTTACACT 1465 Query 160801 TCTACCCCATTTGGGAAGCTGCATCTCTTGATGAATGGCTCTACAATGGTGGTCCTTACC 160860 ||||||| || |||||||| || ||| | ||||| ||| | ||||| ||||||||||||| Sbjct 1466 TCTACCCAATCTGGGAAGCAGCTTCTTTAGATGAGTGGTTATACAACGGTGGTCCTTACC 1525 Query 160861 AACTGGTCGTATTTCACTTCCTGATCGGCATCTTCTGCTACATGGGTCGCGAGTGGGAAC 160920 || | || |||| ||||| | | || | | ||||||||||| || || ||||| | Sbjct 1526 AATTAGTTGTATGCCACTTTTTCTTAGGTGTATGTTGCTACATGGGGCGTGAATGGGAGC 1585 Query 160921 TTTCCTACCGCCTCGGCATGCGCCCCTGGATCTGC-GTTGCATATTCTGCACCTGTTGCT 160979 |||| | ||| | || |||||||| ||||| ||| || || || |||||||| ||||| Sbjct 1586 TTTCTTTCCGTTTAGGTATGCGCCCTTGGAT-TGCTGTAGCTTACTCTGCACCAGTTGCA 1644 Query 160980 GCTGCGAGTGCAGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGGTATG 161039 ||||| | ||| || ||| | |||| ||| |||||||||| ||||| ||| |||||| Sbjct 1645 GCTGCTACTGCTGTGTTCATTATCTACCCTATCGGTCAAGGGTCTTTTAGTGACGGTATG 1704 Query 161040 CCCCTGGGTATCTCTGGTACCTTCAACTTCATGCTTGTCTTCCAGGCAGAACACAACATC 161099 ||| | |||||||| ||||| || ||||| ||| |||| ||||| || || ||||||||| Sbjct 1705 CCCTTAGGTATCTCAGGTACTTTTAACTTTATGATTGTATTCCAAGCTGAGCACAACATC 1764 Query 161100 CTGATGCACCCCTTCCACATGTTGGGTGTTGCTGGTGTCTTCGGTGGTTCTCTGTTCTCC 161159 | |||||||| ||||||||||| |||||||| ||||| || ||||||||||| ||||| Sbjct 1765 TTAATGCACCCTTTCCACATGTTAGGTGTTGCAGGTGTATTTGGTGGTTCTCTTTTCTCT 1824 Query 161160 GCAATGCATGGTTCACTGGTTACTTCTTCCCTGGTTCGTGAAACCACTGAGAACGAGTCC 161219 || |||||||||||| | || ||||| || | | |||||||| ||||||||| | || Sbjct 1825 GCTATGCATGGTTCATTAGTAACTTCATCATTAATCCGTGAAACAACTGAGAACCAATCT 1884 Query 161220 CAGAACTATGGTTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTCGCTGCTCAT 161279 ||| | |||||||| || |||||||||||||| || |||||||| || ||||| || Sbjct 1885 GCTAACGAAGGTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATTGTTGCTGCGCAC 1944 Query 161280 GGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCCTTCAACAACTCCCGTTCGTTGCAC 161339 |||||||| || || |||| |||||||||||||| ||||||||||| ||||| || ||| Sbjct 1945 GGTTACTTTGGGCGTTTGATTTTCCAATACGCTTCTTTCAACAACTCACGTTCTTTACAC 2004 Query 161340 TTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCACTTGGTGTCTCCACC 161399 |||||| | || |||||||| || || || |||||||| ||||| | ||| | || || Sbjct 2005 TTCTTCTTAGCTGCATGGCCAGTAGTAGGGATCTGGTTTACTGCTTTAGGTATATCAACT 2064 Query 161400 ATGGCATTCAACCTGAACGGATTCAACTTCAACCAGTCCATCATGGATGGTCAGGGCAAA 161459 |||||||| ||||| ||||| |||||||| ||||| || | | || ||| || Sbjct 2065 ATGGCATTTAACCTAAACGGTTTCAACTTTAACCAATCAGTTGTAGACTCTCAAGGTCGT 2124 Query 161460 GTCCTGAACACCTGGGCTGACGTTCTGAATCGTGCTAACCTTGGTATGGAAGTAATGCAC 161519 || | ||||| ||||||||| || | || ||||||||||| |||||||| ||||||||| Sbjct 2125 GTAATTAACACATGGGCTGACATTATCAACCGTGCTAACCTAGGTATGGAGGTAATGCAC 2184 Query 161520 GAGCGTAATGCTCACAACTTCCCTCTGGA 161548 || ||||| |||||||||||||| || || Sbjct 2185 GAACGTAACGCTCACAACTTCCCACTTGA 2213 >seq7 Length=22195 Score = 533 bits (590), Expect = 2e-146 Identities = 712/990 (72%), Gaps = 0/990 (0%) Strand=Plus/Plus Query 163914 CGAGATCGCTTTGTCTTTGTGGGTTGGTCTGGATTACTTCTTTTTCCCACTGCTTATCTT 163973 || || || ||||| ||||| |||||||| || ||| | || ||||| || || |||||| Sbjct 4138 CGCGACCGTTTTGTTTTTGTAGGTTGGTCAGGTTTATTACTCTTTCCTACAGCATATCTT 4197 Query 163974 GCAATTGGTGGCTGGCTTACTGGTACAACGTTTGTTACCAGTTGGTACACCCACGGTCTC 164033 || | ||||| ||| | ||||| | || ||||| || |||||| || |||||| | Sbjct 4198 GCTTTAGGTGGATGGTTAACTGGGATTACTTTTGTAACTTCTTGGTATACTCACGGTTTA 4257 Query 164034 GCGTCTAGTTACCTTGAGGGTGCTAATTTCCTTACAGCGGCTGTGTCAACGCCTGCTGAT 164093 || |||||| ||| || ||| ||||||| | || || || || ||||| || || | Sbjct 4258 GCAACTAGTTTCCTAGAAGGTTGTAATTTCTTAACTGCTGCAGTTTCAACTCCAGCAAAC 4317 Query 164094 GCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGGACTTCATTAGG 164153 ||||||||||||| | | | |||||||| || || |||| || || | | | Sbjct 4318 AGTATGGGTCATTCTTTATTGTTTCTTTGGGGACCAGAAGCTCAATCTGATTTTACTCGT 4377 Query 164154 TGGTGCCAACTTGGGGGACTCTGGGCTTTTGTGGCGTTCCACGGATCTTTCGCTCTGATC 164213 |||| ||| | || || || ||||| ||||| || | || ||| |||| ||| | || Sbjct 4378 TGGTTTCAATTAGGCGGGCTTTGGGCATTTGTAGCTCTTCATGGAGCTTTTGCTTTAATT 4437 Query 164214 GGTTTCATGCTTCGGCAGTTTGAAATTGCACGTCTTGTAGGTATCCGTCCGTACAATGCT 164273 ||||| ||| | || || ||||||||||| ||| ||| | | ||||| ||||||||| Sbjct 4438 GGTTTTATGTTACGCCAATTTGAAATTGCTCGTTCAGTAAGACTTCGTCCTTACAATGCT 4497 Query 164274 ATTGCGTTCTCTGGTCCGATTGCTGTCTTTGTCAGCGTTTTCCTTATGTACCCTCTCGGG 164333 |||||||| || | || |||||||| ||||| ||||| | || ||||| | || Sbjct 4498 ATTGCGTTTTCAGCACCTATTGCTGTTTTTGTTTCTGTTTTTTTAATTTACCCGTTAGGT 4557 Query 164334 CAATCTAGTTGGTTCTTTGCCCCCTCGTTTGGGGTCGCGGCGATCTTCAGATTCCTCTTG 164393 || ||| ||||||| ||||| || ||||| | || | ||||| ||||| | | Sbjct 4558 CAGTCTGGTTGGTTTTTTGCTCCTAGTTTTGGTATTGCTTCAATCTTTCGATTCATTCTT 4617 Query 164394 TTCCTCCAAGGTTTCCATAACTGGACACTCAACCCCTTCCATATGATGGGTGTTGCAGGC 164453 || ||||||| ||||| |||||||| | ||||| ||||| |||||||| || || || Sbjct 4618 TTTTTCCAAGGATTCCACAACTGGACTTTAAACCCTTTCCACATGATGGGAGTAGCTGGT 4677 Query 164454 ATCCTTGGTGGTGCTCTTCTCTGTGCTATTCATGGTGCTACCGTAGAGAATACTTTGTTT 164513 | | |||| |||| | || ||||| ||||| ||||| || || || || ||| | ||| Sbjct 4678 GTATTAGGTGCTGCTTTGCTTTGTGCGATTCACGGTGCAACTGTTGAAAACACTCTTTTT 4737 Query 164514 GAAGATGGTGAACAATCAAATACTTTCAAGGCATTCGAGCCTACTCAAGAGGAAGAGACT 164573 ||||||||||| |||| |||||| ||||| | || ||||||| ||||| || Sbjct 4738 GAAGATGGTGATGGTGCAAACACTTTCCGTGCATTTAACCCAACTCAAGCAGAAGAAACG 4797 Query 164574 TACTCGATGGTCACTGCCAACCGCTTCTGGTCTCAGATTTTTGGTATTGCTTTCAGCAAT 164633 ||||| | || || || || || ||||||||||| || |||||| | ||||| || Sbjct 4798 TACTCTTTCGTGACAGCTAATCGTTTCTGGTCTCAAATCTTTGGTGTAGCTTTTTCAAAC 4857 Query 164634 AAGCGTTGGTTGCACTTCTTTATGCTCTTTGTTCCTGTCATGGGACTTTGGACAAGTTCT 164693 || || ||| | ||||| |||||| | ||||| || || | || | |||| ||| | Sbjct 4858 AAACGATGGCTTCACTTTTTTATGTTATTTGTGCCAGTAACTGGTTTATGGATGAGTGCA 4917 Query 164694 ATTGGTATCATCGGTCTCGCACTCAATCTTCGTGCTTATGATTTTGTGTCTCAGGAGATT 164753 ||||| | | ||| | ||| | ||||| || ||||| ||||| || ||||| || ||| Sbjct 4918 CTTGGTGTTGTAGGTTTAGCATTAAATCTACGAGCTTACGATTTCGTATCTCAAGAAATT 4977 Query 164754 AGAGCAGCAGAGGATCCTGAATTTGAGACGTTCTATACGAAGAACATCCTCCTCAATGAA 164813 | |||||||| ||||||||||||||||| || || || || ||||| || | || ||| Sbjct 4978 CGTGCAGCAGAAGATCCTGAATTTGAGACTTTTTACACAAAAAACATTCTTTTAAACGAA 5037 Query 164814 GGACTCCGTGCCTGGATGGCTCCAGTAGACCAGCCACACGAATCGTTTGTATTTCCAGAG 164873 || | ||||| ||||||||| | ||| |||||||| ||| ||||||| || ||| Sbjct 5038 GGTATTCGTGCATGGATGGCTGCTCAAGATCAGCCACATGAAAAAATTGTATTCCCTGAG 5097 Query 164874 GAAGTTCTTCCGAGAGGTAACGCACTCTAA 164903 || || | || | || ||||| || ||| Sbjct 5098 GAGGTATTACCACGTGGAAACGCTCTTTAA 5127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559323266686800