Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Volvox_20carteri_20f._20nagariensis_20[refseq_20GCF_5F000143455.1_20 2010-07-08] 1,251 sequences; 137,684,403 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq1078 131 9e-29 seq1056 131 9e-29 seq1034 131 9e-29 seq947 131 9e-29 seq710 131 9e-29 seq677 131 9e-29 seq295 131 9e-29 seq165 131 9e-29 seq162 131 9e-29 seq118 131 9e-29 seq68 131 9e-29 seq27 131 9e-29 seq13 131 9e-29 seq196 127 1e-27 seq431 91.5 8e-17 >seq1078 Length=2075 Score = 131 bits (144), Expect = 9e-29 Identities = 99/117 (85%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| ||||||||||||| |||||||| | |||||| | | |||||| || Sbjct 1503 GAACCCAAAAACTTTGATTTCTCATAAGGTGCTGGCAGAGTCATCAAAAGAACATCTGCC 1562 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||||||||||| ||||| |||| ||||||||||||||||| ||||||||||| Sbjct 1563 AATCCCTAGTCGGCATCGTTTATGGTTGAGACTACGACGGTATCTAATCGTCTTCGA 1619 >seq1056 Length=2102 Score = 131 bits (144), Expect = 9e-29 Identities = 99/117 (85%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| ||||||||||||| |||||||| | |||||| | | |||||| || Sbjct 580 GAACCCAAAAACTTTGATTTCTCATAAGGTGCTGGCAGAGTCATCAAAAGAACATCTGCC 639 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||||||||||| ||||| |||| ||||||||||||||||| ||||||||||| Sbjct 640 AATCCCTAGTCGGCATCGTTTATGGTTGAGACTACGACGGTATCTAATCGTCTTCGA 696 >seq1034 Length=2333 Score = 131 bits (144), Expect = 9e-29 Identities = 99/117 (85%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| ||||||||||||| |||||||| | |||||| | | |||||| || Sbjct 1549 GAACCCAAAAACTTTGATTTCTCATAAGGTGCTGGCAGAGTCATCAAAAGAACATCTGCC 1608 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||||||||||| ||||| |||| ||||||||||||||||| ||||||||||| Sbjct 1609 AATCCCTAGTCGGCATCGTTTATGGTTGAGACTACGACGGTATCTAATCGTCTTCGA 1665 >seq947 Length=2738 Score = 131 bits (144), Expect = 9e-29 Identities = 99/117 (85%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| ||||||||||||| |||||||| | |||||| | | |||||| || Sbjct 2597 GAACCCAAAAACTTTGATTTCTCATAAGGTGCTGGCAGAGTCATCAAAAGAACATCTGCC 2656 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||||||||||| ||||| |||| ||||||||||||||||| ||||||||||| Sbjct 2657 AATCCCTAGTCGGCATCGTTTATGGTTGAGACTACGACGGTATCTAATCGTCTTCGA 2713 >seq710 Length=6353 Score = 131 bits (144), Expect = 9e-29 Identities = 99/117 (85%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| ||||||||||||| |||||||| | |||||| | | |||||| || Sbjct 594 GAACCCAAAAACTTTGATTTCTCATAAGGTGCTGGCAGAGTCATCAAAAGAACATCTGCC 535 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||||||||||| ||||| |||| ||||||||||||||||| ||||||||||| Sbjct 534 AATCCCTAGTCGGCATCGTTTATGGTTGAGACTACGACGGTATCTAATCGTCTTCGA 478 >seq677 Length=6879 Score = 131 bits (144), Expect = 9e-29 Identities = 99/117 (85%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| ||||||||||||| |||||||| | |||||| | | |||||| || Sbjct 858 GAACCCAAAAACTTTGATTTCTCATAAGGTGCTGGCAGAGTCATCAAAAGAACATCTGCC 917 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||||||||||| ||||| |||| ||||||||||||||||| ||||||||||| Sbjct 918 AATCCCTAGTCGGCATCGTTTATGGTTGAGACTACGACGGTATCTAATCGTCTTCGA 974 Score = 123 bits (136), Expect = 1e-26 Identities = 95/113 (84%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 5 CCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCGATC 64 ||||| ||||||||||||| |||||||| | |||||| | | |||||| || ||| Sbjct 4396 CCAAAAACTTTGATTTCTCATAAGGTGCTGGCAGAGTCATCAAAAGAACATCTGCCAATC 4455 Query 65 CCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||||||||||| ||||| |||| ||||||||||||||||| ||||||||||| Sbjct 4456 CCTAGTCGGCATCGTTTATGGTTGAGACTACGACGGTATCTAATCGTCTTCGA 4508 >seq295 Length=14263 Score = 131 bits (144), Expect = 9e-29 Identities = 99/117 (85%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| ||||||||||||| |||||||| | |||||| | | |||||| || Sbjct 3890 GAACCCAAAAACTTTGATTTCTCATAAGGTGCTGGCAGAGTCATCAAAAGAACATCTGCC 3831 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||||||||||| ||||| |||| ||||||||||||||||| ||||||||||| Sbjct 3830 AATCCCTAGTCGGCATCGTTTATGGTTGAGACTACGACGGTATCTAATCGTCTTCGA 3774 >seq165 Length=45508 Score = 131 bits (144), Expect = 9e-29 Identities = 99/117 (85%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| ||||||||||||| |||||||| | |||||| | | |||||| || Sbjct 5030 GAACCCAAAAACTTTGATTTCTCATAAGGTGCTGGCAGAGTCATCAAAAGAACATCTGCC 5089 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||||||||||| ||||| |||| ||||||||||||||||| ||||||||||| Sbjct 5090 AATCCCTAGTCGGCATCGTTTATGGTTGAGACTACGACGGTATCTAATCGTCTTCGA 5146 Score = 131 bits (144), Expect = 9e-29 Identities = 99/117 (85%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| ||||||||||||| |||||||| | |||||| | | |||||| || Sbjct 6096 GAACCCAAAAACTTTGATTTCTCATAAGGTGCTGGCAGAGTCATCAAAAGAACATCTGCC 6155 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||||||||||| ||||| |||| ||||||||||||||||| ||||||||||| Sbjct 6156 AATCCCTAGTCGGCATCGTTTATGGTTGAGACTACGACGGTATCTAATCGTCTTCGA 6212 Score = 131 bits (144), Expect = 9e-29 Identities = 99/117 (85%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| ||||||||||||| |||||||| | |||||| | | |||||| || Sbjct 32890 GAACCCAAAAACTTTGATTTCTCATAAGGTGCTGGCAGAGTCATCANAAGAACATCTGCC 32949 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||||||||||| ||||| |||| ||||||||||||||||| ||||||||||| Sbjct 32950 AATCCCTAGTCGGCATCGTTTATGGTTGAGACTACGACGGTATCTAATCGTCTTCGA 33006 Score = 131 bits (144), Expect = 9e-29 Identities = 99/117 (85%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| ||||||||||||| |||||||| | |||||| | | |||||| || Sbjct 34273 GAACCCAAAAACTTTGATTTCTCATAAGGTGCTGGCAGAGTCATCAAAAGAACATCTGCC 34332 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||||||||||| ||||| |||| ||||||||||||||||| ||||||||||| Sbjct 34333 AATCCCTAGTCGGCATCGTTTATGGTTGAGACTACGACGGTATCTAATCGTCTTCGA 34389 Score = 131 bits (144), Expect = 9e-29 Identities = 99/117 (85%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| ||||||||||||| |||||||| | |||||| | | |||||| || Sbjct 40011 GAACCCAAAAACTTTGATTTCTCATAAGGTGCTGGCAGAGTCATCAAAAGAACATCTGCC 40070 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||||||||||| ||||| |||| ||||||||||||||||| ||||||||||| Sbjct 40071 AATCCCTAGTCGGCATCGTTTATGGTTGAGACTACGACGGTATCTAATCGTCTTCGA 40127 >seq162 Length=49623 Score = 131 bits (144), Expect = 9e-29 Identities = 99/117 (85%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| ||||||||||||| |||||||| | |||||| | | |||||| || Sbjct 41087 GAACCCAAAAACTTTGATTTCTCATAAGGTGCTGGCAGAGTCATCAAAAGAACATCTGCC 41028 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||||||||||| ||||| |||| ||||||||||||||||| ||||||||||| Sbjct 41027 AATCCCTAGTCGGCATCGTTTATGGTTGAGACTACGACGGTATCTAATCGTCTTCGA 40971 Score = 131 bits (144), Expect = 9e-29 Identities = 99/117 (85%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| ||||||||||||| |||||||| | |||||| | | |||||| || Sbjct 46436 GAACCCAAAAACTTTGATTTCTCATAAGGTGCTGGCAGAGTCATCAAAAGAACATCTGCC 46377 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||||||||||| ||||| |||| ||||||||||||||||| ||||||||||| Sbjct 46376 AATCCCTAGTCGGCATCGTTTATGGTTGAGACTACGACGGTATCTAATCGTCTTCGA 46320 Score = 125 bits (138), Expect = 4e-27 Identities = 98/117 (84%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| ||||||||||||| |||||||| | |||||| | | |||||| || Sbjct 47892 GAACCCAAAAACTTTGATTTCTCATAAGGTGCTGGCAGAGTCATCAAAAGAACATCTGCC 47833 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||||||||||| ||||| |||| ||||||||||||| ||| ||||||||||| Sbjct 47832 AATCCCTAGTCGGCATCGTTTATGGTTGAGACTACGACGGTGTCTAATCGTCTTCGA 47776 >seq118 Length=164916 Score = 131 bits (144), Expect = 9e-29 Identities = 99/117 (85%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| ||||||||||||| |||||||| | |||||| | | |||||| || Sbjct 144600 GAACCCAAAAACTTTGATTTCTCATAAGGTGCTGGCAGAGTCATCAAAAGAACATCTGCC 144541 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||||||||||| ||||| |||| ||||||||||||||||| ||||||||||| Sbjct 144540 AATCCCTAGTCGGCATCGTTTATGGTTGAGACTACGACGGTATCTAATCGTCTTCGA 144484 >seq68 Length=669586 Score = 131 bits (144), Expect = 9e-29 Identities = 99/117 (85%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| ||||||||||||| |||||||| | |||||| | | |||||| || Sbjct 576167 GAACCCAAAAACTTTGATTTCTCATAAGGTGCTGGCAGAGTCATCAAAAGAACATCTGCC 576226 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||||||||||| ||||| |||| ||||||||||||||||| ||||||||||| Sbjct 576227 AATCCCTAGTCGGCATCGTTTATGGTTGAGACTACGACGGTATCTAATCGTCTTCGA 576283 Score = 84.2 bits (92), Expect = 1e-14 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 59 CCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 || ||||||||||||||| ||||| |||| ||||||||||||||||| ||||||||||| Sbjct 578051 CCAATCCCTAGTCGGCATCGTTTATGGTTGAGACTACGACGGTATCTAATCGTCTTCGA 578109 >seq27 Length=1567171 Score = 131 bits (144), Expect = 9e-29 Identities = 99/117 (85%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| ||||||||||||| |||||||| | |||||| | | |||||| || Sbjct 783891 GAACCCAAAAACTTTGATTTCTCATAAGGTGCTGGCAGAGTCATCAAAAGAACATCTGCC 783832 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||||||||||| ||||| |||| ||||||||||||||||| ||||||||||| Sbjct 783831 AATCCCTAGTCGGCATCGTTTATGGTTGAGACTACGACGGTATCTAATCGTCTTCGA 783775 >seq13 Length=2129673 Score = 131 bits (144), Expect = 9e-29 Identities = 99/117 (85%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| ||||||||||||| |||||||| | |||||| | | |||||| || Sbjct 363510 GAACCCAAAAACTTTGATTTCTCATAAGGTGCTGGCAGAGTCATCAAAAGAACATCTGCC 363569 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||||||||||| ||||| |||| ||||||||||||||||| ||||||||||| Sbjct 363570 AATCCCTAGTCGGCATCGTTTATGGTTGAGACTACGACGGTATCTAATCGTCTTCGA 363626 >seq196 Length=39910 Score = 127 bits (140), Expect = 1e-27 Identities = 98/117 (84%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| |||||||| |||| |||||||| | |||||| | | |||||| || Sbjct 752 GAACCCAAAAACTTTGATNTCTCATAAGGTGCTGGCAGAGTCATCAAAAGAACATCTGCC 693 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||||||||||| ||||| |||| ||||||||||||||||| ||||||||||| Sbjct 692 AATCCCTAGTCGGCATCGTTTATGGTTGAGACTACGACGGTATCTAATCGTCTTCGA 636 >seq431 Length=7111 Score = 91.5 bits (100), Expect = 8e-17 Identities = 81/99 (82%), Gaps = 2/99 (2%) Strand=Plus/Plus Query 19 TTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCGATCCCTAGTCGGCATAG 78 ||||| |||||||| | |||||| | | |||||| | ||||||||||||||| | Sbjct 1982 TTCTCATAAGGTGCTGGCAGAGTCATCAA-AGAACATCTGCA-ATCCCTAGTCGGCATCG 2039 Query 79 TTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| |||| ||||||||||||||||| ||||||||||| Sbjct 2040 TTTATGGTTGAGACTACGACGGTATCTAATCGTCTTCGA 2078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278396734890