Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Volvox_20carteri_20f._20nagariensis_20[refseq_20GCF_5F000143455.1_20 2010-07-08] 1,251 sequences; 137,684,403 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq16 159 9e-37 >seq16 Length=2066233 Score = 159 bits (176), Expect = 9e-37 Identities = 198/267 (74%), Gaps = 3/267 (1%) Strand=Plus/Plus Query 73 CGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAATCCCCG 132 |||||| | |||||||||||||| | ||| || | ||| | ||| |||| || | Sbjct 937891 CGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTCGTAAAGTCTAATGTCAAATACCAG 937950 Query 133 GGCTTAACCTGGGAATTGCATTTGTG-ACTGCACGA-CTAGAGTGTGTCAGAGGGGGGTG 190 |||| ||||| ||| ||||| | | ||| ||||| || |||| | ||||| | | Sbjct 937951 GGCTCAACCTTGGATCGGCATTAGAGCACT-CACGAGCTTGAGTACGGTAGAGGCAGAGG 938009 Query 191 GAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGCA 250 ||| |||| ||| ||| |||||||||||||| || |||| |||||||| ||||||||| Sbjct 938010 GAACTCCAAGTGGAGCGGTGAAATGCGTAGAGATTTGGAAGAACACCAGAGGCGAAGGCG 938069 Query 251 GCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGAT 310 | ||||| | |||||| || | |||||||| ||||||| || |||||||||| Sbjct 938070 CTCTGCTGGGCCGAAACTGACACTGAGAGACGAAAGCTGGGGGAGCGAATAGGATTAGAT 938129 Query 311 ACCCTGGTAGTCCACGCCCTAAACGAT 337 ||||| ||||||| ||| ||||| || Sbjct 938130 ACCCTAGTAGTCCCAGCCGTAAACTAT 938156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1289583867104