Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Volvox_20carteri_20f._20nagariensis_20[refseq_20GCF_5F000143455.1_20 2010-07-08] 1,251 sequences; 137,684,403 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq132 132 1e-28 seq16 125 2e-26 seq1 100 9e-19 >seq132 Length=118722 Score = 132 bits (146), Expect = 1e-28 Identities = 141/182 (77%), Gaps = 3/182 (2%) Strand=Plus/Plus Query 7 CGCAAGGTTGAAACTCA-AAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGT 65 |||||| |||||||| |||||||||||||||||||||||||| |||||| |||||| Sbjct 53302 CGCAAGAGTGAAACTCGCAAGGAATTGACGGGGACCCGCACAAGAGGTGGATTATGTGGA 53361 Query 66 TTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTCTAGAG 125 ||||||||| ||||||||||||||||||||| ||||||| || | | ||| Sbjct 53362 TTAATTCGATGCAACGCGAAGAACCTTACCAGGGTTTGACATGTCAAGAACTTCCCAGAA 53421 Query 126 AT-AGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAGCTCG 184 || |||| | ||| |||| | || ||||||| ||||||| ||||||||||| | Sbjct 53422 ATGGGAGGGTGCCCTAACGGGAGCTTGA-ACACAGGTGGTGCATGGCTGTCGTCAGCTTG 53480 Query 185 TG 186 || Sbjct 53481 TG 53482 >seq16 Length=2066233 Score = 125 bits (138), Expect = 2e-26 Identities = 89/101 (88%), Gaps = 1/101 (1%) Strand=Plus/Plus Query 7 CGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTT 66 |||||| | ||||||||||||||||||||||||||||||||| |||||| |||||| | Sbjct 938225 CGCAAGAGT-AAACTCAAAGGAATTGACGGGGACCCGCACAAGAGGTGGATTATGTGGAT 938283 Query 67 TAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACAT 107 |||||||| ||||||||||||||||||||| ||||||| Sbjct 938284 TAATTCGATGCAACGCGAAGAACCTTACCAGGGTTTGACAT 938324 >seq1 Length=5981844 Score = 100 bits (110), Expect = 9e-19 Identities = 71/81 (88%), Gaps = 4/81 (5%) Strand=Plus/Plus Query 156 ACAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAA----GTCCCG 211 ||||||| ||||||| ||||||||||| |||||||||||||||||||| | |||||| Sbjct 3720912 ACAGGTGTTGCATGGCTGTCGTCAGCTTGTGTCGTGAGATGTTGGGTTCAAATTGTCCCG 3720971 Query 212 CAACGAGCGCAACCCTTAAGC 232 ||||||||||||||| || || Sbjct 3720972 CAACGAGCGCAACCCCTACGC 3720992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503981184960