Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Volvox_20carteri_20f._20nagariensis_20[refseq_20GCF_5F000143455.1_20
2010-07-08] 1,251 sequences; 137,684,403 total letters
Query= AAMG01000811.1
Length=502
Score E
Sequences producing significant alignments: (Bits) Value
seq132 132 1e-28
seq16 125 2e-26
seq1 100 9e-19
>seq132
Length=118722
Score = 132 bits (146), Expect = 1e-28
Identities = 141/182 (77%), Gaps = 3/182 (2%)
Strand=Plus/Plus
Query 7 CGCAAGGTTGAAACTCA-AAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGT 65
|||||| |||||||| |||||||||||||||||||||||||| |||||| ||||||
Sbjct 53302 CGCAAGAGTGAAACTCGCAAGGAATTGACGGGGACCCGCACAAGAGGTGGATTATGTGGA 53361
Query 66 TTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTCTAGAG 125
||||||||| ||||||||||||||||||||| ||||||| || | | |||
Sbjct 53362 TTAATTCGATGCAACGCGAAGAACCTTACCAGGGTTTGACATGTCAAGAACTTCCCAGAA 53421
Query 126 AT-AGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAGCTCG 184
|| |||| | ||| |||| | || ||||||| ||||||| ||||||||||| |
Sbjct 53422 ATGGGAGGGTGCCCTAACGGGAGCTTGA-ACACAGGTGGTGCATGGCTGTCGTCAGCTTG 53480
Query 185 TG 186
||
Sbjct 53481 TG 53482
>seq16
Length=2066233
Score = 125 bits (138), Expect = 2e-26
Identities = 89/101 (88%), Gaps = 1/101 (1%)
Strand=Plus/Plus
Query 7 CGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTT 66
|||||| | ||||||||||||||||||||||||||||||||| |||||| |||||| |
Sbjct 938225 CGCAAGAGT-AAACTCAAAGGAATTGACGGGGACCCGCACAAGAGGTGGATTATGTGGAT 938283
Query 67 TAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACAT 107
|||||||| ||||||||||||||||||||| |||||||
Sbjct 938284 TAATTCGATGCAACGCGAAGAACCTTACCAGGGTTTGACAT 938324
>seq1
Length=5981844
Score = 100 bits (110), Expect = 9e-19
Identities = 71/81 (88%), Gaps = 4/81 (5%)
Strand=Plus/Plus
Query 156 ACAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAA----GTCCCG 211
||||||| ||||||| ||||||||||| |||||||||||||||||||| | ||||||
Sbjct 3720912 ACAGGTGTTGCATGGCTGTCGTCAGCTTGTGTCGTGAGATGTTGGGTTCAAATTGTCCCG 3720971
Query 212 CAACGAGCGCAACCCTTAAGC 232
||||||||||||||| || ||
Sbjct 3720972 CAACGAGCGCAACCCCTACGC 3720992
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1503981184960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |