Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Volvox_20carteri_20f._20nagariensis_20[refseq_20GCF_5F000143455.1_20 2010-07-08] 1,251 sequences; 137,684,403 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq29 241 3e-61 >seq29 Length=1535765 Score = 241 bits (266), Expect = 3e-61 Identities = 248/323 (77%), Gaps = 16/323 (5%) Strand=Plus/Minus Query 14 AGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATT 73 || ||||| | || ||||||| |||| |||||||||||||||||||||||||||||||| Sbjct 182326 AGGCCTTCAT-CATTCACGCGGTATTG-CTGGATCAGGCTTTCGCCCATTGTCCAATATT 182269 Query 74 CCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCAT 133 ||||||||||||||| ||||||||||||| ||||| ||||| |||||||| |||||||| Sbjct 182268 CCCCACTGCTGCCTCTCGTAGGAGTCTGGGCCGTGATTCAGTCCCAGTGTGGCTGATCAT 182209 Query 134 CCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAAT 193 ||||||||||||| || |||||| | |||||| ||||||||| |||||||| ||||| Sbjct 182208 CCTCTCAGACCAGCTAAAGATCGTAGGCTTGGTAGGCCATTACCCTACCAACTACCTAAT 182149 Query 194 CCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTCCCGTAGGAC 253 | | ||||||||| |||| | || ||||| || ||| Sbjct 182148 CTTGCGCGGGCTCATCTATCAGCGATA------AA--------TCTTTCCTCCTTAGAGA 182103 Query 254 GTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAGGCAGATTCCTAGG 313 ||| |||||||||| || |||||| || ||||| || ||| ||| ||||||| | | Sbjct 182102 ATATACGGTATTAGCATCTGTTTCCAAATGTTATTCCGTACTGATAGGTAGATTCCCACG 182043 Query 314 CATTACTCACCCGTCCGCCGCTC 336 |||||||||||| ||| ||| Sbjct 182042 TGTTACTCACCCGTTTGCCACTC 182020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071986589280