Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Volvox_20carteri_20f._20nagariensis_20[refseq_20GCF_5F000143455.1_20 2010-07-08] 1,251 sequences; 137,684,403 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq33 93.3 2e-16 seq65 84.2 8e-14 seq1078 80.6 1e-12 seq1033 80.6 1e-12 seq987 80.6 1e-12 seq821 80.6 1e-12 seq763 80.6 1e-12 seq699 80.6 1e-12 seq663 80.6 1e-12 seq576 80.6 1e-12 seq525 80.6 1e-12 seq522 80.6 1e-12 seq316 80.6 1e-12 seq196 80.6 1e-12 seq165 80.6 1e-12 seq162 80.6 1e-12 seq128 80.6 1e-12 seq92 80.6 1e-12 seq10 80.6 1e-12 seq29 77.0 1e-11 seq9 75.2 4e-11 >seq33 Length=1491501 Score = 93.3 bits (102), Expect = 2e-16 Identities = 104/135 (77%), Gaps = 13/135 (10%) Strand=Plus/Plus Query 400 CATTCTTCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATT 459 |||| | |||||| |||||||||| || | |||| ||| |||||||| | || Sbjct 206279 CATTATACAAAAGATACGCCGTCAC--GGAA--TAAA------TTCCGCTCCGACTGCTT 206328 Query 460 GTAGGCACATGGTTTCAGGTACTATTTCACTCCCC--GCCAGGGGTACTTTTCACCTTTC 517 ||| ||| |||||||| ||||||||||||| | | ||||| ||||||||||||| Sbjct 206329 GTAAGCATTCGGTTTCAGTGTCTATTTCACTCCCGTTGTC-GGGGTTCTTTTCACCTTTC 206387 Query 518 CCTCACGGTACTTGT 532 ||||||||||||||| Sbjct 206388 CCTCACGGTACTTGT 206402 >seq65 Length=794414 Score = 84.2 bits (92), Expect = 8e-14 Identities = 93/123 (76%), Gaps = 12/123 (10%) Strand=Plus/Plus Query 388 AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAG 447 || |||| |||||||||||||| |||||||| ||||| | |||| ||| | Sbjct 438215 AAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCACAAG---CCTA-------CTT--G 438262 Query 448 CTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTT 507 |||| || | |||| ||| | ||||||| || |||||||||||||| ||||||| ||| Sbjct 438263 CTCCCACTGCTTGTCAGCATACGGTTTCATGTTCTATTTCACTCCCCAACAGGGGTTCTT 438322 Query 508 TTC 510 ||| Sbjct 438323 TTC 438325 >seq1078 Length=2075 Score = 80.6 bits (88), Expect = 1e-12 Identities = 56/64 (88%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 502 GTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGG 561 || ||||||| |||||||||||||||||||| ||||||||||| | || ||||||||| Sbjct 58 GTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTCAGCAGTATTTAGC 117 Query 562 CTTA 565 |||| Sbjct 118 CTTA 121 >seq1033 Length=2159 Score = 80.6 bits (88), Expect = 1e-12 Identities = 56/64 (88%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 502 GTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGG 561 || ||||||| |||||||||||||||||||| ||||||||||| | || ||||||||| Sbjct 507 GTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTCAGCAGTATTTAGC 566 Query 562 CTTA 565 |||| Sbjct 567 CTTA 570 >seq987 Length=2347 Score = 80.6 bits (88), Expect = 1e-12 Identities = 56/64 (88%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 502 GTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGG 561 || ||||||| |||||||||||||||||||| ||||||||||| | || ||||||||| Sbjct 1805 GTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTCAGCAGTATTTAGC 1864 Query 562 CTTA 565 |||| Sbjct 1865 CTTA 1868 >seq821 Length=6062 Score = 80.6 bits (88), Expect = 1e-12 Identities = 56/64 (88%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 502 GTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGG 561 || ||||||| |||||||||||||||||||| ||||||||||| | || ||||||||| Sbjct 902 GTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTCAGCAGTATTTAGC 843 Query 562 CTTA 565 |||| Sbjct 842 CTTA 839 Score = 80.6 bits (88), Expect = 1e-12 Identities = 56/64 (88%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 502 GTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGG 561 || ||||||| |||||||||||||||||||| ||||||||||| | || ||||||||| Sbjct 2416 GTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTCAGCAGTATTTAGC 2357 Query 562 CTTA 565 |||| Sbjct 2356 CTTA 2353 >seq763 Length=5051 Score = 80.6 bits (88), Expect = 1e-12 Identities = 56/64 (88%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 502 GTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGG 561 || ||||||| |||||||||||||||||||| ||||||||||| | || ||||||||| Sbjct 328 GTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTCAGCAGTATTTAGC 269 Query 562 CTTA 565 |||| Sbjct 268 CTTA 265 >seq699 Length=6362 Score = 80.6 bits (88), Expect = 1e-12 Identities = 56/64 (88%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 502 GTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGG 561 || ||||||| |||||||||||||||||||| ||||||||||| | || ||||||||| Sbjct 924 GTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTCAGCAGTATTTAGC 983 Query 562 CTTA 565 |||| Sbjct 984 CTTA 987 >seq663 Length=6474 Score = 80.6 bits (88), Expect = 1e-12 Identities = 56/64 (88%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 502 GTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGG 561 || ||||||| |||||||||||||||||||| ||||||||||| | || ||||||||| Sbjct 334 GTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTCAGCAGTATTTAGC 275 Query 562 CTTA 565 |||| Sbjct 274 CTTA 271 >seq576 Length=6107 Score = 80.6 bits (88), Expect = 1e-12 Identities = 56/64 (88%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 502 GTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGG 561 || ||||||| |||||||||||||||||||| ||||||||||| | || ||||||||| Sbjct 5343 GTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTCAGCAGTATTTAGC 5284 Query 562 CTTA 565 |||| Sbjct 5283 CTTA 5280 >seq525 Length=4110 Score = 80.6 bits (88), Expect = 1e-12 Identities = 56/64 (88%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 502 GTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGG 561 || ||||||| |||||||||||||||||||| ||||||||||| | || ||||||||| Sbjct 657 GTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTCAGCAGTATTTAGC 598 Query 562 CTTA 565 |||| Sbjct 597 CTTA 594 >seq522 Length=6502 Score = 80.6 bits (88), Expect = 1e-12 Identities = 56/64 (88%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 502 GTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGG 561 || ||||||| |||||||||||||||||||| ||||||||||| | || ||||||||| Sbjct 5829 GTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTCAGCAGTATTTAGC 5888 Query 562 CTTA 565 |||| Sbjct 5889 CTTA 5892 Score = 77.0 bits (84), Expect = 1e-11 Identities = 55/64 (86%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 502 GTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGG 561 || ||||||| || ||||||||||||||||| ||||||||||| | || ||||||||| Sbjct 4658 GTTCTTTTCATCTNTCCCTCACGGTACTTGTTCGCTATCGGTCTCTCAGCAGTATTTAGC 4717 Query 562 CTTA 565 |||| Sbjct 4718 CTTA 4721 >seq316 Length=13033 Score = 80.6 bits (88), Expect = 1e-12 Identities = 56/64 (88%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 502 GTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGG 561 || ||||||| |||||||||||||||||||| ||||||||||| | || ||||||||| Sbjct 597 GTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTCAGCAGTATTTAGC 538 Query 562 CTTA 565 |||| Sbjct 537 CTTA 534 >seq196 Length=39910 Score = 80.6 bits (88), Expect = 1e-12 Identities = 56/64 (88%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 502 GTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGG 561 || ||||||| |||||||||||||||||||| ||||||||||| | || ||||||||| Sbjct 4761 GTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTCAGCAGTATTTAGC 4702 Query 562 CTTA 565 |||| Sbjct 4701 CTTA 4698 Score = 80.6 bits (88), Expect = 1e-12 Identities = 56/64 (88%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 502 GTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGG 561 || ||||||| |||||||||||||||||||| ||||||||||| | || ||||||||| Sbjct 38002 GTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTCAGCAGTATTTAGC 37943 Query 562 CTTA 565 |||| Sbjct 37942 CTTA 37939 >seq165 Length=45508 Score = 80.6 bits (88), Expect = 1e-12 Identities = 56/64 (88%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 502 GTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGG 561 || ||||||| |||||||||||||||||||| ||||||||||| | || ||||||||| Sbjct 3668 GTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTCAGCAGTATTTAGC 3727 Query 562 CTTA 565 |||| Sbjct 3728 CTTA 3731 >seq162 Length=49623 Score = 80.6 bits (88), Expect = 1e-12 Identities = 56/64 (88%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 502 GTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGG 561 || ||||||| |||||||||||||||||||| ||||||||||| | || ||||||||| Sbjct 1050 GTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTCAGCAGTATTTAGC 991 Query 562 CTTA 565 |||| Sbjct 990 CTTA 987 Score = 80.6 bits (88), Expect = 1e-12 Identities = 56/64 (88%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 502 GTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGG 561 || ||||||| |||||||||||||||||||| ||||||||||| | || ||||||||| Sbjct 2188 GTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTCAGCAGTATTTAGC 2129 Query 562 CTTA 565 |||| Sbjct 2128 CTTA 2125 >seq128 Length=133146 Score = 80.6 bits (88), Expect = 1e-12 Identities = 56/64 (88%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 502 GTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGG 561 || ||||||| |||||||||||||||||||| ||||||||||| | || ||||||||| Sbjct 132684 GTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTCAGCAGTATTTAGC 132625 Query 562 CTTA 565 |||| Sbjct 132624 CTTA 132621 >seq92 Length=408206 Score = 80.6 bits (88), Expect = 1e-12 Identities = 56/64 (88%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 502 GTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGG 561 || ||||||| |||||||||||||||||||| ||||||||||| | || ||||||||| Sbjct 101915 GTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTCAGCAGTATTTAGC 101856 Query 562 CTTA 565 |||| Sbjct 101855 CTTA 101852 >seq10 Length=2191866 Score = 80.6 bits (88), Expect = 1e-12 Identities = 56/64 (88%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 502 GTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGG 561 || ||||||| |||||||||||||||||||| ||||||||||| | || ||||||||| Sbjct 2016483 GTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTCAGCAGTATTTAGC 2016424 Query 562 CTTA 565 |||| Sbjct 2016423 CTTA 2016420 >seq29 Length=1535765 Score = 77.0 bits (84), Expect = 1e-11 Identities = 53/60 (88%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 506 TTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTA 565 |||||| |||||||||||||||||||| ||||||||||| | || ||||||||| |||| Sbjct 320373 TTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTCAGCAGTATTTAGCCTTA 320314 >seq9 Length=2229794 Score = 75.2 bits (82), Expect = 4e-11 Identities = 55/64 (86%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 502 GTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGG 561 || ||| ||| |||||||||||||||||||| ||||||||||| | || ||||||||| Sbjct 453301 GTTCTTGTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTCAGCAGTATTTAGT 453242 Query 562 CTTA 565 |||| Sbjct 453241 CTTA 453238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817577261824