Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Volvox_20carteri_20f._20nagariensis_20[refseq_20GCF_5F000143455.1_20 2010-07-08] 1,251 sequences; 137,684,403 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq33 158 3e-36 seq65 93.3 1e-16 seq1078 84.2 5e-14 seq1033 84.2 5e-14 seq987 84.2 5e-14 seq821 84.2 5e-14 seq763 84.2 5e-14 seq699 84.2 5e-14 seq663 84.2 5e-14 seq576 84.2 5e-14 seq525 84.2 5e-14 seq522 84.2 5e-14 seq316 84.2 5e-14 seq196 84.2 5e-14 seq165 84.2 5e-14 seq162 84.2 5e-14 seq128 84.2 5e-14 seq92 84.2 5e-14 seq10 84.2 5e-14 seq29 78.8 2e-12 seq9 75.2 3e-11 seq1022 73.4 1e-10 >seq33 Length=1491501 Score = 158 bits (174), Expect = 3e-36 Identities = 117/137 (85%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 202 GTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTGGGCTCCCACTGCTT 261 || |||||||||||||||||||| ||||| ||||| || ||| | ||||| ||||||| Sbjct 206269 GTTGCTGACCCATTATACAAAAGATACGCCGTCACGGAATAAATTCCGCTCCGACTGCTT 206328 Query 262 GTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCC 321 ||| |||| ||||||||| |||||||||||||| | ||||||||||||| ||||||| Sbjct 206329 GTAAGCATTCGGTTTCAGTGTCTATTTCACTCCCGTTGTCGGGGTTCTTTTCACCTTTCC 206388 Query 322 CTCACGGTACTAGTTCA 338 ||||||||||| ||||| Sbjct 206389 CTCACGGTACTTGTTCA 206405 >seq65 Length=794414 Score = 93.3 bits (102), Expect = 1e-16 Identities = 92/117 (79%), Gaps = 3/117 (3%) Strand=Plus/Plus Query 198 ATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTGGGCTCCCACT 257 ||||||||| | | |||| | ||| ||| |||| ||||| | | || |||||||| Sbjct 438213 ATAAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCACAAGCCTACTTG--CTCCCACT 438270 Query 258 GCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCG 314 |||||| ||||||||||||| | ||||||||||||||| | ||||||||||||| Sbjct 438271 GCTTGTCAGCATACGGTTTCATGTTCTATTTCACTCCCC-AACAGGGGTTCTTTTCG 438326 >seq1078 Length=2075 Score = 84.2 bits (92), Expect = 5e-14 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 305 GTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGC 364 ||||||||| ||||||||||||||||| |||| ||||||||| |||| |||||||||| Sbjct 58 GTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTCAGCAGTATTTAGC 117 Query 365 CTTGGA 370 ||| || Sbjct 118 CTTAGA 123 >seq1033 Length=2159 Score = 84.2 bits (92), Expect = 5e-14 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 305 GTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGC 364 ||||||||| ||||||||||||||||| |||| ||||||||| |||| |||||||||| Sbjct 507 GTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTCAGCAGTATTTAGC 566 Query 365 CTTGGA 370 ||| || Sbjct 567 CTTAGA 572 >seq987 Length=2347 Score = 84.2 bits (92), Expect = 5e-14 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 305 GTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGC 364 ||||||||| ||||||||||||||||| |||| ||||||||| |||| |||||||||| Sbjct 1805 GTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTCAGCAGTATTTAGC 1864 Query 365 CTTGGA 370 ||| || Sbjct 1865 CTTAGA 1870 >seq821 Length=6062 Score = 84.2 bits (92), Expect = 5e-14 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 305 GTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGC 364 ||||||||| ||||||||||||||||| |||| ||||||||| |||| |||||||||| Sbjct 902 GTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTCAGCAGTATTTAGC 843 Query 365 CTTGGA 370 ||| || Sbjct 842 CTTAGA 837 Score = 84.2 bits (92), Expect = 5e-14 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 305 GTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGC 364 ||||||||| ||||||||||||||||| |||| ||||||||| |||| |||||||||| Sbjct 2416 GTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTCAGCAGTATTTAGC 2357 Query 365 CTTGGA 370 ||| || Sbjct 2356 CTTAGA 2351 >seq763 Length=5051 Score = 84.2 bits (92), Expect = 5e-14 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 305 GTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGC 364 ||||||||| ||||||||||||||||| |||| ||||||||| |||| |||||||||| Sbjct 328 GTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTCAGCAGTATTTAGC 269 Query 365 CTTGGA 370 ||| || Sbjct 268 CTTAGA 263 >seq699 Length=6362 Score = 84.2 bits (92), Expect = 5e-14 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 305 GTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGC 364 ||||||||| ||||||||||||||||| |||| ||||||||| |||| |||||||||| Sbjct 924 GTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTCAGCAGTATTTAGC 983 Query 365 CTTGGA 370 ||| || Sbjct 984 CTTAGA 989 >seq663 Length=6474 Score = 84.2 bits (92), Expect = 5e-14 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 305 GTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGC 364 ||||||||| ||||||||||||||||| |||| ||||||||| |||| |||||||||| Sbjct 334 GTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTCAGCAGTATTTAGC 275 Query 365 CTTGGA 370 ||| || Sbjct 274 CTTAGA 269 >seq576 Length=6107 Score = 84.2 bits (92), Expect = 5e-14 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 305 GTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGC 364 ||||||||| ||||||||||||||||| |||| ||||||||| |||| |||||||||| Sbjct 5343 GTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTCAGCAGTATTTAGC 5284 Query 365 CTTGGA 370 ||| || Sbjct 5283 CTTAGA 5278 >seq525 Length=4110 Score = 84.2 bits (92), Expect = 5e-14 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 305 GTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGC 364 ||||||||| ||||||||||||||||| |||| ||||||||| |||| |||||||||| Sbjct 657 GTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTCAGCAGTATTTAGC 598 Query 365 CTTGGA 370 ||| || Sbjct 597 CTTAGA 592 >seq522 Length=6502 Score = 84.2 bits (92), Expect = 5e-14 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 305 GTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGC 364 ||||||||| ||||||||||||||||| |||| ||||||||| |||| |||||||||| Sbjct 5829 GTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTCAGCAGTATTTAGC 5888 Query 365 CTTGGA 370 ||| || Sbjct 5889 CTTAGA 5894 Score = 80.6 bits (88), Expect = 7e-13 Identities = 57/66 (86%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 305 GTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGC 364 ||||||||| || |||||||||||||| |||| ||||||||| |||| |||||||||| Sbjct 4658 GTTCTTTTCATCTNTCCCTCACGGTACTTGTTCGCTATCGGTCTCTCAGCAGTATTTAGC 4717 Query 365 CTTGGA 370 ||| || Sbjct 4718 CTTAGA 4723 >seq316 Length=13033 Score = 84.2 bits (92), Expect = 5e-14 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 305 GTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGC 364 ||||||||| ||||||||||||||||| |||| ||||||||| |||| |||||||||| Sbjct 597 GTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTCAGCAGTATTTAGC 538 Query 365 CTTGGA 370 ||| || Sbjct 537 CTTAGA 532 >seq196 Length=39910 Score = 84.2 bits (92), Expect = 5e-14 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 305 GTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGC 364 ||||||||| ||||||||||||||||| |||| ||||||||| |||| |||||||||| Sbjct 4761 GTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTCAGCAGTATTTAGC 4702 Query 365 CTTGGA 370 ||| || Sbjct 4701 CTTAGA 4696 Score = 84.2 bits (92), Expect = 5e-14 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 305 GTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGC 364 ||||||||| ||||||||||||||||| |||| ||||||||| |||| |||||||||| Sbjct 38002 GTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTCAGCAGTATTTAGC 37943 Query 365 CTTGGA 370 ||| || Sbjct 37942 CTTAGA 37937 >seq165 Length=45508 Score = 84.2 bits (92), Expect = 5e-14 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 305 GTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGC 364 ||||||||| ||||||||||||||||| |||| ||||||||| |||| |||||||||| Sbjct 3668 GTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTCAGCAGTATTTAGC 3727 Query 365 CTTGGA 370 ||| || Sbjct 3728 CTTAGA 3733 >seq162 Length=49623 Score = 84.2 bits (92), Expect = 5e-14 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 305 GTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGC 364 ||||||||| ||||||||||||||||| |||| ||||||||| |||| |||||||||| Sbjct 1050 GTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTCAGCAGTATTTAGC 991 Query 365 CTTGGA 370 ||| || Sbjct 990 CTTAGA 985 Score = 84.2 bits (92), Expect = 5e-14 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 305 GTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGC 364 ||||||||| ||||||||||||||||| |||| ||||||||| |||| |||||||||| Sbjct 2188 GTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTCAGCAGTATTTAGC 2129 Query 365 CTTGGA 370 ||| || Sbjct 2128 CTTAGA 2123 >seq128 Length=133146 Score = 84.2 bits (92), Expect = 5e-14 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 305 GTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGC 364 ||||||||| ||||||||||||||||| |||| ||||||||| |||| |||||||||| Sbjct 132684 GTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTCAGCAGTATTTAGC 132625 Query 365 CTTGGA 370 ||| || Sbjct 132624 CTTAGA 132619 >seq92 Length=408206 Score = 84.2 bits (92), Expect = 5e-14 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 305 GTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGC 364 ||||||||| ||||||||||||||||| |||| ||||||||| |||| |||||||||| Sbjct 101915 GTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTCAGCAGTATTTAGC 101856 Query 365 CTTGGA 370 ||| || Sbjct 101855 CTTAGA 101850 >seq10 Length=2191866 Score = 84.2 bits (92), Expect = 5e-14 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 305 GTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGC 364 ||||||||| ||||||||||||||||| |||| ||||||||| |||| |||||||||| Sbjct 2016483 GTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTCAGCAGTATTTAGC 2016424 Query 365 CTTGGA 370 ||| || Sbjct 2016423 CTTAGA 2016418 >seq29 Length=1535765 Score = 78.8 bits (86), Expect = 2e-12 Identities = 57/66 (86%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 305 GTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGC 364 ||| ||||| ||||||||||||||||| |||| ||||||||| |||| |||||||||| Sbjct 320377 GTTATTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTCAGCAGTATTTAGC 320318 Query 365 CTTGGA 370 ||| || Sbjct 320317 CTTAGA 320312 >seq9 Length=2229794 Score = 75.2 bits (82), Expect = 3e-11 Identities = 56/66 (85%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 305 GTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGC 364 |||||| || ||||||||||||||||| |||| ||||||||| |||| ||||||||| Sbjct 453301 GTTCTTGTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTCAGCAGTATTTAGT 453242 Query 365 CTTGGA 370 ||| || Sbjct 453241 CTTAGA 453236 >seq1022 Length=2201 Score = 73.4 bits (80), Expect = 1e-10 Identities = 49/55 (89%), Gaps = 0/55 (0%) Strand=Plus/Plus Query 316 CTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGA 370 ||||||||||||||||| |||| ||||||||| |||| ||||||||||||| || Sbjct 1376 CTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTCAGCAGTATTTAGCCTTAGA 1430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241584467584