Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Volvox_20carteri_20f._20nagariensis_20[refseq_20GCF_5F000143455.1_20 2010-07-08] 1,251 sequences; 137,684,403 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq16 120 5e-25 >seq16 Length=2066233 Score = 120 bits (132), Expect = 5e-25 Identities = 164/224 (73%), Gaps = 4/224 (2%) Strand=Plus/Minus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 |||| ||||||| ||||| ||||||| | | |||||| |||||||||| ||||||| Sbjct 938110 CCCA-GCTTTCGTCTCTCAGTGTCAGTTTCGGCCCAGCAGAGCGCCTTCGCCTCTGGTGT 938052 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 || ||| || |||||||||||||||||| ||| ||| |||| ||||||| | | || Sbjct 938051 TCTTCCAAATCTCTACGCATTTCACCGCTCCACTTGGAGTTCCCTCTGCCTCTACCGTAC 937992 Query 121 TCAAGAAAAACAGT-TTCAAATGCAGGCTATGGGTTGAGCCCATAGT-TTTCACATCTGA 178 ||||| ||| || ||||| | |||||||||| | || ||| |||| || Sbjct 937991 TCAAGCTCGTGAGTGCTCTAATGCCGATCCAAGGTTGAGCCC-TGGTATTTGACATTAGA 937933 Query 179 CTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGA 222 ||| | || |||||| | |||||| |||||| | |||||| Sbjct 937932 CTTTACGAGCCACCTACAGACGCTTTACGCCCAATCATTCCGGA 937889 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 828789955721