Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Volvox_20carteri_20f._20nagariensis_20[refseq_20GCF_5F000143455.1_20 2010-07-08] 1,251 sequences; 137,684,403 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq18 93.3 7e-17 seq54 78.8 1e-12 >seq18 Length=1986213 Score = 93.3 bits (102), Expect = 7e-17 Identities = 73/86 (85%), Gaps = 1/86 (1%) Strand=Plus/Plus Query 184 CGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTA 243 |||| |||||||| ||| ||| || |||||||||||||||||||||| |||| ||||||| Sbjct 1796689 CGTT-TGAACCCACCTCACGTACCACTTTAATGGGCGAACAGCCCAAACCTTCGGACCTA 1796747 Query 244 CTTCAGCCCCAGGATGAGACGAGCCG 269 || ||| | |||||| || |||||| Sbjct 1796748 CTACAGACGGAGGATGTGATGAGCCG 1796773 >seq54 Length=968918 Score = 78.8 bits (86), Expect = 1e-12 Identities = 57/66 (86%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 84 GGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATT 143 ||| |||||||||| ||||| | ||||||||||||||||| | ||| |||||||||| | Sbjct 595746 GGTCCACCAGAGGTACGTCCACCTCGGTCCTCTCGTACTAAAGGCAGATCCTCTCAAACT 595805 Query 144 TCCTAC 149 |||||| Sbjct 595806 TCCTAC 595811 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780790537436