Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Volvox_20carteri_20f._20nagariensis_20[refseq_20GCF_5F000143455.1_20 2010-07-08] 1,251 sequences; 137,684,403 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq29 257 4e-66 >seq29 Length=1535765 Score = 257 bits (284), Expect = 4e-66 Identities = 297/399 (74%), Gaps = 17/399 (4%) Strand=Plus/Minus Query 17 AGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCC 76 |||||||| |||| ||||||| || |||| ||||||||| |||||||||| ||||||||| Sbjct 182326 AGGCCTTCATCATTCACGCGGTATTGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCC 182267 Query 77 CCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCC 136 ||||||||||||| ||||||||||||| ||||| ||||| |||||||||||| |||||| Sbjct 182266 CCACTGCTGCCTCTCGTAGGAGTCTGGGCCGTGATTCAGTCCCAGTGTGGCTGATCATCC 182207 Query 137 TCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAATCC 196 |||||||||||||| |||||| | || ||| ||||||||||| ||||||| |||||| Sbjct 182206 TCTCAGACCAGCTAAAGATCGTAGGCTTGGTAGGCCATTACCCTACCAACTACCTAATCT 182147 Query 197 CATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGGTCTTGCGACGTT 256 ||| ||||| || || | || ||||| || | || | Sbjct 182146 TGCGCGGGCTCATCTATCAGCGATA------AA--------TCTTTCCTCCTTAGAGAAT 182101 Query 257 ATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCAGTTTCCCAGACA 316 || |||||||||| | ||||||| ||||| || | ||| || |||||| Sbjct 182100 ATACGGTATTAGCATCTGTTTCCAAATGTTATTCCGTACTGATAGGTAGATTCCCACGTG 182041 Query 317 TTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGC-TTCCTGTTACCGTTCGA 375 |||||||||||| ||||||| | | ||||||| | | |||| ||||||| Sbjct 182040 TTACTCACCCGTTTGCCACTCACTAAAATTGGAGCAAGCCCCAATTTTGTT--CGTTCGA 181983 Query 376 CTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 ||||||||||||| || | |||||||||||| |||||| Sbjct 181982 CTTGCATGTGTTAAGCATACCGCCAGCGTTCGTTCTGAG 181944 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222384707776