Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Volvox_20carteri_20f._20nagariensis_20[refseq_20GCF_5F000143455.1_20 2010-07-08] 1,251 sequences; 137,684,403 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq16 219 1e-54 >seq16 Length=2066233 Score = 219 bits (242), Expect = 1e-54 Identities = 254/341 (74%), Gaps = 10/341 (3%) Strand=Plus/Plus Query 69 TCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCT 128 |||||||| | ||||||||||| || |||||||| | | ||||| | || ||| | Sbjct 937889 TCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTCGTAAAGTCTAATGTCAAATACC 937948 Query 129 ATGGCTCAACCCCGGGACTGCTTTTGAA-ACTGCAGGGCTAGAGTGCAGGAGGGGCAAGT 187 | ||||||||| || | || || || ||| | ||| |||| | | || |||| Sbjct 937949 AGGGCTCAACCTTGGATCGGCATTAGAGCACTCACGAGCTTGAGTACGGTAGAGGCAGAG 938008 Query 188 GGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGC 247 |||| ||| |||| |||||||||||||||||| ||| ||| ||||||||| ||||||||| Sbjct 938009 GGAACTCCAAGTGGAGCGGTGAAATGCGTAGAGATTTGGAAGAACACCAGAGGCGAAGGC 938068 Query 248 GGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGA 307 | |||||| | | ||||||||||||| ||||||| ||||||| || ||||||||| Sbjct 938069 GCTCTGCTGGGCCGAAACTGACACTGAGAGACGAAAGCTGGGGGAGCGAATAGGATTAGA 938128 Query 308 TACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATAAGTGCTCC 367 |||||| ||||||| ||||||||| ||| | |||| ||| | || ||| | Sbjct 938129 TACCCTAGTAGTCCCAGCCGTAAACTATGGAGACTAAGTGCTGCCGC----AAG-----C 938179 Query 368 GGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 |||| | ||| ||||| ||||| | || ||||||||||| Sbjct 938180 AGTGCTGTAGCTAACGCGTTAAGTCTCCCGCCTGGGGAGTA 938220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203184947968