Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Volvox_20carteri_20f._20nagariensis_20[refseq_20GCF_5F000143455.1_20 2010-07-08] 1,251 sequences; 137,684,403 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq29 161 2e-37 >seq29 Length=1535765 Score = 161 bits (178), Expect = 2e-37 Identities = 184/245 (75%), Gaps = 9/245 (4%) Strand=Plus/Minus Query 69 TTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGC 128 ||||| |||| ||||| |||||| ||| |||||||| ||||||| | || Sbjct 182350 TTATTTCCTT-TAAAAAAAGTTTT-------TAGG-CCTTCATCATTCACGCGGTATTGC 182300 Query 129 TGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGG 188 ||| |||| || ||| |||||| |||||||||| |||||||||||| ||||||||| ||| Sbjct 182299 TGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCTCGTAGGAGTCTGG 182240 Query 189 ACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCT 248 ||||| ||||| ||| ||||| || | |||||||||| | ||| |||||||||| Sbjct 182239 GCCGTGATTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGCTAAAGATCGTAGGCT 182180 Query 249 AGGTGGGCCGTTACCCCGCCTACTACCTAATGGAACGCATCCCCATCGTACACCGATGAA 308 ||| |||| |||||| || |||||||||| ||| | |||| || |||| || Sbjct 182179 TGGTAGGCCATTACCCTACCAACTACCTAATCTTGCGCGGGCTCATCTATCAGCGATAAA 182120 Query 309 TCTTT 313 ||||| Sbjct 182119 TCTTT 182115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1068786629312