Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Volvox_20carteri_20f._20nagariensis_20[refseq_20GCF_5F000143455.1_20 2010-07-08] 1,251 sequences; 137,684,403 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq35 127 2e-24 seq8 100 2e-16 >seq35 Length=1396082 Score = 127 bits (140), Expect = 2e-24 Identities = 127/165 (77%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399 ||| || || || || ||||| ||| ||||||| ||||| || || || |||||| | Sbjct 1360639 CATGAACAGGTCCGGAATCCAAAGGCCGTAGAACAGATCACGCGCGCGCGCCTCCTCCTT 1360698 Query 66400 GCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTA 66459 ||||||||| ||||||| || | ||||| |||| ||| |||||||| || || | ||| Sbjct 1360699 GCCGTGATTCTTGCGCAGATCCAAAAACTCGAAGACGTCCGCATGCCAGGGCTCGATGTA 1360758 Query 66460 GATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTA 66504 ||||||||| | |||| | || |||||||| || ||||| || || Sbjct 1360759 GATGGCGAAGGCGCCCTTGCGCTTGCCGCCGCCCTGGTCCACATA 1360803 >seq8 Length=2307048 Score = 100 bits (110), Expect = 2e-16 Identities = 117/158 (74%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 61195 TTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTA 61254 || || ||| | |||||||| ||||| || || ||||||||||| | ||||| | Sbjct 630937 TTTATCAAATACGTGTTGGCATTCTTCGCTGCCAGCGACGGTATCGTGATGGAGAACCTG 630996 Query 61255 TTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAG 61314 | || || ||| | ||||||||| ||| | ||||| || ||||||||||||||| Sbjct 630997 TCGGCGCGGTTCATGTCGGAGGTGCAGGTGCCTGAGGCCCGCGCATTCTACGGCTTCCAG 631056 Query 61315 ATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGT 61352 ||||||||||| || || || ||||||||||| || Sbjct 631057 ATTGCCATGGAAAACGTGCATAGCGAGATGTACAGCGT 631094 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397561938454640