Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Volvox_20carteri_20f._20nagariensis_20[refseq_20GCF_5F000143455.1_20
2010-07-08] 1,251 sequences; 137,684,403 total letters
Query= NC_031922.1
Length=174830
Score E
Sequences producing significant alignments: (Bits) Value
seq10 206 3e-48
seq65 84.2 2e-11
>seq10
Length=2191866
Score = 206 bits (228), Expect = 3e-48
Identities = 208/268 (78%), Gaps = 2/268 (1%)
Strand=Plus/Minus
Query 160572 TTCTGCGAGTGGGTAACTTCTACAAACAATCGTCTTTACGTCGGTTGGTTCGGTGTGCTG 160631
|| || |||||| | ||||| || | || || |||||| |||||||||||||||| |
Sbjct 2092372 TTTTGTGAGTGGATCACTTCAACTGAGAACCGCCTTTACATCGGTTGGTTCGGTGTAATC 2092313
Query 160632 ATGATCCCAACTCTGTTGGCAGCAACCGTCTGC-TTTATTACTGCGTTCGTTGCTGCTCC 160690
||||||||| ||| | | ||||| || | ||||| | || ||| | ||||||||
Sbjct 2092312 ATGATCCCATGTCTTCTTACTGCAACA-TCAGTATTTATCATCGCTTTCATCGCTGCTCC 2092254
Query 160691 CCCCGTGGACATCGACGGTATCCGTGAACCCGTTGCTGGTTCACTGATGTATGGAAACAA 160750
|| || |||||||| ||||| |||||||| ||| | ||||| || | ||||| |||||
Sbjct 2092253 GCCAGTAGACATCGATGGTATTCGTGAACCAGTTTCAGGTTCTCTTCTTTATGGTAACAA 2092194
Query 160751 CATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGTCTTCACTTCTACCCCAT 160810
||||||| | ||||| |||||||| |||| ||||| || || || || |||||||| ||
Sbjct 2092193 CATCATCACAGGTGCTGTTGTTCCAACTTCTAACGCTATCGGCCTGCATTTCTACCCAAT 2092134
Query 160811 TTGGGAAGCTGCATCTCTTGATGAATGG 160838
|||||||||||| ||||| ||||| |||
Sbjct 2092133 TTGGGAAGCTGCTTCTCTAGATGAGTGG 2092106
>seq65
Length=794414
Score = 84.2 bits (92), Expect = 2e-11
Identities = 52/56 (93%), Gaps = 0/56 (0%)
Strand=Plus/Plus
Query 161271 GCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCCTTCAACAACTC 161326
||||||||||||||||| ||||| || ||||||||||||||||| |||||||||||
Sbjct 544456 GCTGCTCATGGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCATTCAACAACTC 544511
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 559319253508400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |