Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16] 26,721 sequences; 604,217,145 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq16707 178 3e-42 seq2950 118 2e-24 seq5489 114 3e-23 seq13915 102 2e-19 seq26717 95.1 2e-17 seq1779 73.4 8e-11 >seq16707 Length=103149 Score = 178 bits (196), Expect = 3e-42 Identities = 179/230 (78%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||||| |||| | |||||| ||||||| |||||||||| ||||||||||| Sbjct 5032 GGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGC 4973 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGT 229 | ||||| | |||| | ||| ||| | || | | |||||||||||| ||||| Sbjct 4972 GTGCAAAGGTTTCCTCGGGCCGGACGGAGATTG-GCCCTCGAGTGCAAAGGCAGAAGGGA 4914 Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289 | |||||||| | |||| | ||| ||||| |||||||||||| |||| ||||||| ||| Sbjct 4913 GCTTGACTGCAAGACCCACCCGTCGAGCAGAGACGAAAGTCGGCCTTAGTGATCCGACGG 4854 Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||| || ||||| ||||||||||| ||||||||||| ||| || |||||| Sbjct 4853 TGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 4804 >seq2950 Length=170447 Score = 118 bits (130), Expect = 2e-24 Identities = 103/128 (80%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 211 AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTC 270 ||||||||||| |||||| | |||||||| | |||| | ||| |||||||||||||||| Sbjct 105978 AGTGCAAAGGCCAAAGGGAGCTTGACTGCAAGACCCACTCGTCGAGCAGGGACGAAAGTC 105919 Query 271 GGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACC 330 | |||| |||||| ||||| || ||||| |||| || ||| | ||||||||| ||| Sbjct 105918 AGCCTTAGTGATCCAATGGTGCCGAGTGGAAGGGCCATCACTCAATGGATAAAAGTTACT 105859 Query 331 CTGGGGAT 338 || ||||| Sbjct 105858 CTAGGGAT 105851 >seq5489 Length=15745 Score = 114 bits (126), Expect = 3e-23 Identities = 170/236 (72%), Gaps = 14/236 (6%) Strand=Plus/Minus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||| | |||| | |||||| ||||||| |||||||||| |||| | |||| Sbjct 10545 GGGACAATATCAGGTTGACAGTTTTTATGGGGCGTAGGCCTCCCAAAAGGTAATGTAGGC 10486 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACC---ATGCGCAC---AGTGCAAAGGCA-A 223 | ||||| | | | || || || ||| || || | |||||||||||| | Sbjct 10485 GTGCAAAGGTT---TTATCTGGGCTG--AACGGAGATTGGCCCTCGAGTGCAAAGGCAGA 10431 Query 224 AAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATC 283 || || | |||||||| | ||| | ||| |||||||||||||||||| |||| ||||| Sbjct 10430 AAAGGAGCTTGACTGCAAGCCCCACTCGTCAAGCAGGGACGAAAGTCGGCCTTAGTGATC 10371 Query 284 CGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 || ||||| || ||||| ||| ||||||| | | || ||| ||| || |||||| Sbjct 10370 CGATGGTGCCGAGTGGAAGGGCTGTCGCTCAATGAAT--AAGTTACTCTAGGGATA 10317 >seq13915 Length=57994 Score = 102 bits (112), Expect = 2e-19 Identities = 132/180 (73%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||||| |||| | |||||| ||||||| |||| ||||| |||||||| || Sbjct 18146 GGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTTCCAAAAGGTAACGGATGC 18205 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGT 229 |||||| | |||| | | |||| || | || | | |||||||||||| ||||| Sbjct 18206 TTCCAAAGGTTTCCTCGGATCGGATAGAGATTG-GCCCTCGAGTGCAAAGGCAGAAGGGA 18264 Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289 | |||||| | | |||| | ||| || ||||| |||| |||| |||| ||||||| ||| Sbjct 18265 GCTTGACTTCAAGACCCACCCGTCAAGAAGGGAAGAAAATCGGCCTTAGTGATCCGACGG 18324 >seq26717 Length=25563 Score = 95.1 bits (104), Expect = 2e-17 Identities = 117/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||||| |||| | |||||| ||||||| |||||||||| ||||||||||| Sbjct 12695 GGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGC 12754 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTG 230 | ||||| | |||| | ||| ||| | | |||||||||||| ||||| | Sbjct 12755 GTGCAAAGGTTTCCTCGGGCCGGACGGAGATTGGACCTCGAGTGCAAAGGCAGAAGGGAG 12814 Query 231 TTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTC 270 |||||||| | |||| ||| |||||||||||||||| Sbjct 12815 CTTGACTGCAAGACCCAACCGTCGAGCAGGGACGAAAGTC 12854 >seq1779 Length=142649 Score = 73.4 bits (80), Expect = 8e-11 Identities = 82/107 (77%), Gaps = 2/107 (2%) Strand=Plus/Plus Query 233 TGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGC 292 |||||| || ||| |||| || | ||| |||||||||||| | || |||||||| | | Sbjct 133547 TGACTGTGAGACC-TCAA-TCAAACAGAGACGAAAGTCGGCCATAGTGATCCGGGAATCC 133604 Query 293 TGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 || ||||| ||| ||||| |||||| |||| ||| | ||||||| Sbjct 133605 TGTGTGGAAGGGCTCTCGCTAAACGGATCAAAGGTACGCCGGGGATA 133651 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982137492896