Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16] 26,721 sequences; 604,217,145 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq16707 214 4e-53 seq18206 161 2e-37 seq3941 118 3e-24 seq6332 96.9 9e-18 seq3002 96.9 9e-18 seq13912 95.1 3e-17 seq13608 87.8 4e-15 seq21852 86.0 2e-14 seq15976 86.0 2e-14 seq8109 82.4 2e-13 seq1660 80.6 7e-13 seq19677 77.0 8e-12 >seq16707 Length=103149 Score = 214 bits (236), Expect = 4e-53 Identities = 309/421 (73%), Gaps = 19/421 (5%) Strand=Plus/Plus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| ||||| | || |||||| ||||||||||| |||||| ||||| | Sbjct 6555 CCACAACTCAT-CCGCTGA-TTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGTT-TC 6611 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 |||||| ||| || |||| ||| ||||||||| ||| | || |||||| || | || Sbjct 6612 ACCCAAGCTT-CATCCTGGTCAT-GGATAGATCACCCAGGTT-CGGGTCCATAAGC-AGT 6667 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTA----A 182 ||| | | |||||| |||||||||||| ||||||| |||| | ||| ||| | Sbjct 6668 GACAATA-GCCCTATGAAGACTCGCTTT-CGCTACGGCTCCGGTGGGTTCCGTTCCCTTA 6725 Query 183 GCTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACA 242 | ||||||| || |||||| | | |||| | ||| ||| |||| |||| | || Sbjct 6726 ACCAAGCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAGAGATCA 6785 Query 243 AAGTGGGCTCCCACTGCTTGTACGCATA---CGGTTTCAGGATCTATTTCACTCCCCTCT 299 | ||||||||||||| || | |||||||| | ||||||||||| ||| || Sbjct 6786 CTTTCCCCTCCCACTGCTTGGGAGCTCAGCACGGTTTCACGTTCTATTTCACTACCCACT 6845 Query 300 CCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTAT 359 |||||||||||| ||||||||||||||||||| ||| |||||||||| ||| ||||| Sbjct 6846 G-GGGGTTCTTTTCACCTTTCCCTCACGGTACTACTTCGCTATCGGTCACCCAGGAGTAT 6904 Query 360 TTAGCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTC 419 ||||||||| | | |||||| | ||||| || || | ||||| || | |||||| Sbjct 6905 TTAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCACGTGCCCCATGCTACTC 6964 Query 420 G 420 | Sbjct 6965 G 6965 >seq18206 Length=5097 Score = 161 bits (178), Expect = 2e-37 Identities = 273/379 (72%), Gaps = 26/379 (7%) Strand=Plus/Plus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| | ||| | ||||||||| |||| |||| | |||||| ||||| | Sbjct 2753 CCACAACTCAT-CTGCTGA-TTTTTCAACATGAGTCAGTTCAGACCTCCACTTAGTTGC- 2809 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 |||||| ||| || ||| ||| ||||||||| ||| | || |||||| || || Sbjct 2810 ACCCAAGCTT-CATCCTAATCAT-GGATAGATCACCCAGATT-CGGGTCCATAAGT-AGT 2865 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTT 186 ||| | ||||| |||||| | ||||||||||| |||| | ||| |||| | Sbjct 2866 GACAATT-GCCCTTTGAAGACTTG-TTTTCGCTACGGCTCCAATGGGTTCCCTTAACCAA 2923 Query 187 TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCA---CCCAACAA 243 ||||||| || |||||| | | |||| | ||| ||| | || |||| ||| Sbjct 2924 -GCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCATGCGGTCAGAGCCC----- 2977 Query 244 AGTGGGCTCC---CACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTC 300 |||||||| |||| |||| || ||| |||||| | || |||||||||||| | Sbjct 2978 --TGGGCTCCTCCCACTACTTGAGAGCTTACTGTTTCATGTTCCATTTCACTCCCCAATA 3035 Query 301 CGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATT 360 |||||||||||| || |||||||||||||||| ||| |||| ||||| || |||||| Sbjct 3036 -GGGGTTCTTTTCACCCTTCCCTCACGGTACTACTTCGCTATTGGTCACCTAGGAGTATT 3094 Query 361 TAGCCTTGGAGGATGGTCC 379 |||||||| | | |||||| Sbjct 3095 TAGCCTTGCAAGGTGGTCC 3113 >seq3941 Length=133704 Score = 118 bits (130), Expect = 3e-24 Identities = 172/229 (75%), Gaps = 12/229 (5%) Strand=Plus/Minus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| ||||||| ||||||||| ||||||||||| |||||| |||||| | Sbjct 131278 CCACAACTCAT-CCGCTAA-TTTTTCAACATCAGTCGGTTCGGACCTCCACTTAGTA-TC 131222 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 |||||| | |||| |||| |||| |||||||| ||| | |||||||| | | ||| Sbjct 131221 ACCCAAAC-TTCATCCTGGTCATA-GATAGATCACCCAG-GTTCGGGTCCA-TAAGCAGT 131166 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCT--ATTCGGTTAAGCTT 186 ||| | |||||| ||||||||| |||||||||| |||| | ||| |||| | Sbjct 131165 GAC-AATTGCCCTATGAAGACTCGC-TTTCGCTACGGCTCCGGTGGGTTCCCTTAA-CCA 131109 Query 187 TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCA 235 ||||||| || |||||| | | |||| | ||| ||| ||||||||| Sbjct 131108 AGCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCAGTCA 131060 >seq6332 Length=300956 Score = 96.9 bits (106), Expect = 9e-18 Identities = 92/115 (80%), Gaps = 2/115 (2%) Strand=Plus/Minus Query 266 GCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCA 325 || ||| |||||| ||||||||||||||||| | |||||||||||| || ||||| || Sbjct 293881 GCTTACAGTTTCATGATCTATTTCACTCCCCGGTG-GGGGTTCTTTTCCCCCTTCCCCCA 293823 Query 326 CGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAG-CCTTGGAGGATGGTCC 379 ||||||| ||| ||||| |||| ||| ||| ||||| ||||| | | ||||| Sbjct 293822 TGGTACTATTTCGCTATCAGTCACCCAGAAGTCTTTAGCCCTTGCAAGGCGGTCC 293768 >seq3002 Length=82644 Score = 96.9 bits (106), Expect = 9e-18 Identities = 251/365 (69%), Gaps = 21/365 (6%) Strand=Plus/Plus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| ||||| ||||| | || |||||| | |||||| | |||||| ||||| | Sbjct 32017 CCACAAGTCAT-CCGCTGA-TTCTTCAACATCATTCGGTTTGA-CCTCCACTTAGTT-TC 32072 Query 69 ACC-CAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAG 127 ||| ||| ||| || | || |||| |||| |||| ||| | || ||| || || | | Sbjct 32073 ACCACAAGCTT-CATCTTGGCCAT-GGATGGATCACCCAGGTT-CGGCTCCATAAGCAAT 32129 Query 128 CGACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCT 185 ||| | |||||| |||||||||| || | |||| |||| | ||| |||| | Sbjct 32130 -GACAATT-GCCCTATGAAGACTCGCTCTT-GATACGGCTCCGGTGGGTTCCTTTAACCA 32186 Query 186 TTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCA---CCCAACA 242 ||||| || || || || | | ||| ||| ||||||||| ||| | Sbjct 32187 A-GCCACCACCTATGAGACGTCAGGTCACTCTTCAATAGGCACGCAGTCAGAGCCCTA-- 32243 Query 243 AAGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCG 302 | |||||| |||||| || ||| |||||| | |||||||||||||| | | Sbjct 32244 --GGCTCCTCCCATTGCTTGGGAGCTTACAGTTTCAAGTCCTATTTCACTCCCCAATGGG 32301 Query 303 GGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTA 362 ||||||||||| || || |||||||||||| ||| ||||||| | || | ||||| Sbjct 32302 GGGTTCTTTTCACCCTTATCTCACGGTACTACTTCGCTATCGGACGCCCAAGATTATTTT 32361 Query 363 GCCTT 367 ||||| Sbjct 32362 GCCTT 32366 >seq13912 Length=32694 Score = 95.1 bits (104), Expect = 3e-17 Identities = 84/101 (83%), Gaps = 3/101 (3%) Strand=Plus/Minus Query 266 GCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCA 325 || |||||||||| ||||||||||||| ||| | ||||||| |||| || |||||||| Sbjct 9866 GCTTACGGTTTCAC-ATCTATTTCACTCTCCTAT-GGGGGTTC-TTTCACCCTTCCCTCA 9810 Query 326 CGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCT 366 ||||||| ||| |||| ||||| |||| ||||||||| || Sbjct 9809 TGGTACTACTTCGCTATTGGTCACTCAGGAGTATTTAGTCT 9769 >seq13608 Length=96868 Score = 87.8 bits (96), Expect = 4e-15 Identities = 122/159 (77%), Gaps = 9/159 (6%) Strand=Plus/Minus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| ||||| | ||||||||| ||||||||||| |||||| ||||| | Sbjct 45854 CCACAACTCAT-CCGCTGA-TTTTTCAACATCAGTCGGTTCGGACCTCCACTTAGT-TTC 45798 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 |||||| | |||| |||| ||| ||||||||| ||| | |||||||| | | ||| Sbjct 45797 ACCCAAGC-TTCATCCTGGTCAT-GGATAGATCACCCAG-GTTCGGGTCCA-TAAGCAGT 45742 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCT 167 ||| | |||||| ||||||||| |||||||||| || Sbjct 45741 GAC-AATTGCCCTATGAAGACTCGC-TTTCGCTACGGCT 45705 >seq21852 Length=4437 Score = 86.0 bits (94), Expect = 2e-14 Identities = 87/112 (78%), Gaps = 1/112 (1%) Strand=Plus/Plus Query 250 CTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCT 309 ||||||||||||| || |||||||||| | ||||||||||||| | | |||||||| Sbjct 2658 CTCCCACTGCTTGAGAGCGTACGGTTTCAAGTTCTATTTCACTCCTCGAT-GGGGGTTCT 2716 Query 310 TTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTT 361 | || | ||| ||||| |||||| || |||||||| | || ||||||| Sbjct 2717 TCTCACGCTTCTCTCACAGTACTACTTTGCTATCGGTTGCTTAGGAGTATTT 2768 >seq15976 Length=77994 Score = 86.0 bits (94), Expect = 2e-14 Identities = 87/112 (78%), Gaps = 1/112 (1%) Strand=Plus/Minus Query 250 CTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCT 309 ||||||||||||| || |||||||||| | ||||||||||||| | | |||||||| Sbjct 41382 CTCCCACTGCTTGAGAGCGTACGGTTTCAAGTTCTATTTCACTCCTCGAT-GGGGGTTCT 41324 Query 310 TTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTT 361 | || | ||| ||||| |||||| || |||||||| | || ||||||| Sbjct 41323 TCTCACGCTTCTCTCACAGTACTACTTTGCTATCGGTTGCTTAGGAGTATTT 41272 >seq8109 Length=3964 Score = 82.4 bits (90), Expect = 2e-13 Identities = 122/161 (76%), Gaps = 9/161 (6%) Strand=Plus/Plus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| ||||| | ||||||||| ||||||||||| |||||| ||||| | Sbjct 322 CCACAACTCAT-CCGCTGA-TTTTTCAACATCAGTCGGTTCGGACCTCCACTTAGT-TTC 378 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 |||||| | |||| |||| ||| ||||||||| ||| | |||||||| | | ||| Sbjct 379 ACCCAAGC-TTCATCCTGGTCAT-GGATAGATCACCCAG-GTTCGGGTCCA-TAAGCAGT 434 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCC 169 ||| | |||||| ||||||||| ||||||| | || || Sbjct 435 GAC-AATTGCCCTATGAAGACTCGC-TTTCGCTGCACCACC 473 >seq1660 Length=179582 Score = 80.6 bits (88), Expect = 7e-13 Identities = 79/101 (78%), Gaps = 1/101 (1%) Strand=Plus/Plus Query 282 TCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTA 341 |||||| ||||||| | ||||||||||| |||||||||||||||||| || | ||| Sbjct 50317 TCTATTGCACTCCC-TAAATAGGGTTCTTTTCACCTTTCCCTCACGGTACTTGTACGCTA 50375 Query 342 TCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCC 382 ||||||| | || | | |||| ||| |||| || || ||| Sbjct 50376 TCGGTCATTGAGGAAGACTTAGGCTTAGAGGCTGATCGCCC 50416 >seq19677 Length=64902 Score = 77.0 bits (84), Expect = 8e-12 Identities = 62/74 (84%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 306 TTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCC 365 |||||||| || |||||||| ||||||| ||| |||||||||| || ||||||||||| Sbjct 8863 TTCTTTTCACCCTTCCCTCA-GGTACTACTTCGCTATCGGTCACCCAAAAGTATTTAGCC 8921 Query 366 TTGGAGGATGGTCC 379 ||| | | |||||| Sbjct 8922 TTGCAAGGTGGTCC 8935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241268232064