Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16] 26,721 sequences; 604,217,145 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq16707 205 2e-50 seq18248 150 4e-34 seq9663 138 3e-30 seq13330 111 4e-22 seq8109 93.3 1e-16 seq6332 93.3 1e-16 seq2746 84.2 5e-14 seq3713 75.2 3e-11 >seq16707 Length=103149 Score = 205 bits (226), Expect = 2e-50 Identities = 297/409 (73%), Gaps = 18/409 (4%) Strand=Plus/Plus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| ||||||| |||||| || ||||||||| | ||| ||| | | Sbjct 5939 CGACTACGCCTTTCGGCCTGATCTTAGGCCCTGACTCACCCTCCGTGGACGAACCTTGCG 5998 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 ||||||||| | | |||| | | |||||| |||| | || |||||| ||| Sbjct 5999 GAGGAACCCTTAGGTTTTCGGGGCATTGGATTCTCACCAATGTTTTCGTTACTCAAGCCG 6058 Query 120 GCATTCTCACT--CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACAC 177 ||||||| || ||| || || ||| | | | | ||| ||||| || || | | Sbjct 6059 ACATTCTCGCTTCCGCTTCG--TCGACCCC-CGCTTTCGCGGTTGCTTC-CCTCTAAGGC 6114 Query 178 G--ACGCTCCCCTACCCAACCAC----ACAGGTTGCCACAGCTTCGGCGGATAACTTAAG 231 | ||||||||||||| | | ||| | ||||||||||||| ||| |||| | Sbjct 6115 GGAACGCTCCCCTACCGATGTATTTTTACA---TCCCACAGCTTCGGCAGATCGCTTA-G 6170 Query 232 CCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAG 291 ||||| | ||| || |||| | || || ||||||||||||||||||||||| ||| Sbjct 6171 CCCCGTT-CATCTTCAGCGCAAGGGCGCTCGATCAGTGAGCTATTACGCACTCTTTAAAG 6229 Query 292 GATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTG 351 | |||||||||| | || |||||||||| ||||| ||| | |||| |||||| ||||| Sbjct 6230 GGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTTTGCACCCCCACCTCCTTTATCACTG 6289 Query 352 AGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 || || |||||||||||||||| ||||| ||||||||||||||||| Sbjct 6290 AGCGGTCATTTAGGGGCCTTAGCTGGTGATCCGGGCTGTTTCCCTCTCG 6338 >seq18248 Length=39838 Score = 150 bits (166), Expect = 4e-34 Identities = 137/170 (81%), Gaps = 2/170 (1%) Strand=Plus/Plus Query 207 CCACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCA 266 ||||||||||||| ||| |||| |||||| | ||| ||||||| | | | || || || Sbjct 38132 CCACAGCTTCGGCAGATCGCTTA-GCCCCGTT-CATCTTCGGCGCAGGAGCGCTCGATCA 38189 Query 267 GTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTA 326 |||||||||||||||||||||||||| |||||||||| | || |||||||||| ||||| Sbjct 38190 GTGAGCTATTACGCACTCTTTCAAGGGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTC 38249 Query 327 CGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTG 376 || | | || |||||| ||||||| || |||||||||||||||| Sbjct 38250 TGCCCCCCTACCTCCTTTATCACTGAGCGGTCATTTAGGGGCCTTAGCTG 38299 >seq9663 Length=49490 Score = 138 bits (152), Expect = 3e-30 Identities = 117/143 (82%), Gaps = 1/143 (1%) Strand=Plus/Minus Query 259 CTTGACCAGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTG 318 || || ||||||||||||| |||||||||||||| |||||||||| | || || |||||| Sbjct 36345 CTCGATCAGTGAGCTATTATGCACTCTTTCAAGGGTGGCTGCTTCTAGGCAAATCTCCTG 36286 Query 319 GTTGTCTACGCAACTCCACATCC-TTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGA 377 ||||||| ||| | | || ||| ||| ||||||| || |||||| ||||||||| Sbjct 36285 GTTGTCTCTGCACCCCTACGTCCTTTTATCACTGAGCAGTCATTTAGGGACCTTAGCTGG 36226 Query 378 TGATCTGGGCTGTTTCCCTCTCG 400 ||| ||||| ||||||||||||| Sbjct 36225 TGACCTGGGTTGTTTCCCTCTCG 36203 >seq13330 Length=88757 Score = 111 bits (122), Expect = 4e-22 Identities = 141/192 (73%), Gaps = 9/192 (5%) Strand=Plus/Plus Query 212 GCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGC---GGAATCACTTGACCAGT 268 ||||||| | || |||| ||||| | |||||| |||| || ||| | | | | | Sbjct 55354 GCTTCGGTGAATCACTTGAGCCCTGATACATTTTCGGTGCCATGGAG---CGTCATCGGA 55410 Query 269 GAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACG 328 |||||||||| | ||||| ||||||||||||||||||||| |||||||||||||| | Sbjct 55411 GAGCTATTACACTTTCTTTAAAGGATGGCTGCTTCCAAGCCCACCTCCTGGTTGTCATCA 55470 Query 329 CAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCT 388 | ||| ||||| ||||| ||| | ||||||| | ||| | ||||| |||| Sbjct 55471 CTTGATCACTGCCTTTTCCACTAAGTGATTTCTTAGGGAC---AGCGTACGATCTTGGCT 55527 Query 389 GTTTCCCTCTCG 400 |||| |||||| Sbjct 55528 ATTTCACTCTCG 55539 >seq8109 Length=3964 Score = 93.3 bits (102), Expect = 1e-16 Identities = 77/94 (82%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 307 GCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGG 366 || |||||||||| ||||| ||| | | || |||||| ||||||| || |||||| Sbjct 6 GCAAACCTCCTGGCTGTCTCTGCACCCCTACCTCCTTTATCACTGAGCGGTCATTTAGGG 65 Query 367 GCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 |||||||||| ||||| ||||||||||||||||| Sbjct 66 GCCTTAGCTGGTGATCCGGGCTGTTTCCCTCTCG 99 >seq6332 Length=300956 Score = 93.3 bits (102), Expect = 1e-16 Identities = 111/150 (74%), Gaps = 17/150 (11%) Strand=Plus/Minus Query 267 GTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTC----CAA----GCCAACCTCCTG 318 ||||||||||| |||||||||||||| ||||| |||| ||| || | ||||||| Sbjct 294467 GTGAGCTATTATGCACTCTTTCAAGGGTGGCTTCTTCTAGGCAAACCTGCAAGCCTCCTG 294408 Query 319 GTTGTCTACGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGAT 378 | ||||| ||| | | || | ||| ||||||| || | ||||||||| |||||| | Sbjct 294407 GCTGTCTCTGCACCCCTACCACTTTTATCACTGAG-CATCGTTTAGGGGCCCTAGCTGGT 294349 Query 379 GA--------TCTGGGCTGTTTCCCTCTCG 400 || || ||||||||||||||||| Sbjct 294348 GATCCGGGCTTCCGGGCTGTTTCCCTCTCG 294319 >seq2746 Length=69449 Score = 84.2 bits (92), Expect = 5e-14 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 312 CCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTT 371 |||||||| ||||| ||| | | | |||||| ||||| || || ||||||||||| Sbjct 45024 CCTCCTGGCTGTCTCTGCACCCCTATCTCCTTTGTCACTGGGTGGTCATTTAGGGGCCTT 45083 Query 372 AGCTGATGATCTGGGCTGTTTCCCTCTCG 400 ||||| ||||||||| ||||||||||||| Sbjct 45084 AGCTGGTGATCTGGGTTGTTTCCCTCTCG 45112 >seq3713 Length=127013 Score = 75.2 bits (82), Expect = 3e-11 Identities = 76/98 (78%), Gaps = 6/98 (6%) Strand=Plus/Minus Query 212 GCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGC---GGAATCACTTGACCAGT 268 ||||||| | || |||| ||||| | |||||| |||| || ||| | | |||||| Sbjct 121120 GCTTCGGTGAATCACTTGAGCCCTGATACATTTTCGGTGCCATGGAG---CGTCACCAGT 121064 Query 269 GAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAA 306 |||||||||||| |||| |||||||||||||| ||| Sbjct 121063 GAGCTATTACGCTTTCTTCAAAGGATGGCTGCTTACAA 121026 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177285333504