Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16] 26,721 sequences; 604,217,145 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq16707 154 2e-35 seq9995 118 2e-24 seq3999 104 4e-20 seq7115 73.4 7e-11 >seq16707 Length=103149 Score = 154 bits (170), Expect = 2e-35 Identities = 205/285 (72%), Gaps = 0/285 (0%) Strand=Plus/Plus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65 ||||||| ||||| |||||| | | |||||| || |||||| |||||||| | Sbjct 10544 GCTTTCGTCTCTCAGTGTCAGTGTCGGCCCAGCAGAGTGCTTTCGCCGTTGGTGTTCTTT 10603 Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125 | || || | ||||||||||||| ||| | |||||| |||| || | | |||| || Sbjct 10604 CCGATCTCAAAGCATTTCACCGCTCCACCGGAAATTCCCTCTGCCCCTACCGTACTCCAG 10663 Query 126 AAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCT 185 |||||| | || | ||||||||||| | ||| || | ||||| Sbjct 10664 CTTGGTAGTTTCCACCGCCTGTCCAGGGTTGAGCCCTGGGATTTGACGGCGGACTTAAAA 10723 Query 186 TCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTA 245 || |||||| | |||||| |||||| | |||||||||||||||| ||| || ||| Sbjct 10724 AGCCACCTACAGACGCTTTACGCCCAATCATTCCGGATAACGCTTGCATCCTCAGTCTTA 10783 Query 246 CCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||||||||||||||| ||||||||| ||||||||||||| || Sbjct 10784 CCGCGGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCTCAGATA 10828 >seq9995 Length=90594 Score = 118 bits (130), Expect = 2e-24 Identities = 193/278 (69%), Gaps = 0/278 (0%) Strand=Plus/Plus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65 ||||||| || || |||||| | | ||||||| || |||||| |||||||| | Sbjct 68076 GCTTTCGTCTCTTAGTGTCAGTGTCGGCCCAGCAAAGTGCTTTCGCCGTTGGTGTTCTTT 68135 Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125 | || | || |||||||||||| ||| | |||||| ||||| || | |||| || Sbjct 68136 CAGATCGCAACACATTTCACCGCTCCACTGGAAATTCCCTTTGCCCCTATCGTACTCCAG 68195 Query 126 AAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCT 185 |||||| | || | |||||||| || | | | || | ||||| Sbjct 68196 CTTGGTAGTTTCCACCGCCTGTCCAGGGTTGAGTCCTGGGATATGACGGCGGACTTAAAA 68255 Query 186 TCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTA 245 || ||||| ||| || ||||| | |||||||||||||||| ||| ||| ||| Sbjct 68256 AGCCATCTACAGATACTTAACGGCCAATCATTCCGGATAACGCTTGCATCCTCCGTGTTA 68315 Query 246 CCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCC 283 |||||||||||||||| ||||||||| ||||||||| Sbjct 68316 CCGCGGCTGCTGGCACAGAGTTAGCCGATGCTTATTCC 68353 >seq3999 Length=229116 Score = 104 bits (114), Expect = 4e-20 Identities = 81/97 (84%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 |||||||| ||||||||| |||| | | |||| | ||| |||||| || ||| ||||| Sbjct 31692 CCGCCTACGTGCCCTTTACGCCCAGTCATTCCGAAGAACACTTGCCCCCCCCGTCTTACC 31751 Query 248 GCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCT 284 ||||||||||||||| ||||||||| ||||| ||||| Sbjct 31752 GCGGCTGCTGGCACGGAGTTAGCCGGGGCTTCTTCCT 31788 >seq7115 Length=118481 Score = 73.4 bits (80), Expect = 7e-11 Identities = 150/223 (67%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 19 AGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTCCGTATATCTACGC 78 || |||||| | | |||||| || |||||| ||| |||| | | || || |||| Sbjct 21853 AGTGTCAGTGTCGGCCCAGCAGAGTGCTTTCGCCGTTGGGGTTCTTTCCGATCTCAACGC 21794 Query 79 ATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAGAAAAACAGTTTCA 138 ||||||||||| ||| | |||||| |||| || | | | || || |||||| Sbjct 21793 ATTTCACCGCTCCACCGGAAATTCCCTCTGCCCCTACCGTATTCCAGCTTGGTAGTTTCC 21734 Query 139 AATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCTTCCCGCCTACACG 198 | | | | ||||||||||| | ||| || | ||||| || |||| | Sbjct 21733 ACCGTCTGTTCAGGGTTGAGCCCTGGGATTTGACGGCGGACTTAAAAAGCCACCTATAGA 21674 Query 199 CCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGT 241 |||||| |||||| | |||||||||||||||| ||| ||| Sbjct 21673 TGCTTTACGCCCAATCATTCCGGATAACGCTTGCATCCTCCGT 21631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 828585457091