Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16] 26,721 sequences; 604,217,145 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq16707 250 4e-64 seq13644 244 2e-62 seq14946 199 6e-49 seq19533 188 1e-45 seq18921 188 1e-45 seq1779 167 4e-39 seq17130 152 8e-35 seq853 87.8 3e-15 seq6519 75.2 2e-11 >seq16707 Length=103149 Score = 250 bits (276), Expect = 4e-64 Identities = 220/273 (81%), Gaps = 1/273 (0%) Strand=Plus/Plus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62 || |||||| |||| |||| |||||| |||||| ||| |||| ||| |||||| Sbjct 4481 GGTGGGCTTACTACTTATATGCTTTCAGCAGTTATCCTCTCCGCACTTGGCTACCCAGCG 4540 Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 | | | | |||| | ||||||| |||||||||| |||| |||||||||||||||||| Sbjct 4541 TTTACCGTAGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACT 4600 Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182 | ||| || ||||||||| || |||||||| |||||| ||||||||||||||| || Sbjct 4601 AGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACG 4660 Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242 |||||||||||||||||| ||| || | ||||||||||||||||||||||||||| ||| Sbjct 4661 ACGTTCTGAACCCAGCTCACGTACCGCATTAATGGGCGAACAGCCCAACCCTTGGAACCA 4720 Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 || |||| ||||| | || |||||||||||| Sbjct 4721 CCTACAGCTCCAGGTGGCGAAGAGCCGACATCG 4753 >seq13644 Length=81176 Score = 244 bits (270), Expect = 2e-62 Identities = 205/250 (82%), Gaps = 1/250 (0%) Strand=Plus/Minus Query 27 TTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC-TATGCACTTGGCAGTACAACTGG 85 |||||| |||||| |||| |||| ||| || ||| | | | | |||| | |||||| Sbjct 56546 TTCAGCAGTTATCCGTTCCGCACTTGGCTACCTAGCGTTTACCGTGGGCACGATAACTGG 56487 Query 86 TGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTC 145 | |||||||||| |||| |||||||| |||||||||| ||| || ||||||||| | || Sbjct 56486 TACACCAGAGGTGCGTCCTTCCCGGTCGTCTCGTACTAGGGAAAGGTCCTCTCAATTCTC 56427 Query 146 CTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTG 205 |||||||| |||||| ||||||||||||||| ||||||||| |||||||||| ||| Sbjct 56426 TAACGCCCACACCGGATATGGACCGAACTGTCTCACGACGTTCTTAACCCAGCTCACGTA 56367 Query 206 CCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGA 265 || |||||||||||||||| |||||||||||| || |||| |||||||||| | || || Sbjct 56366 CCGCTTTAATGGGCGAACATCCCAACCCTTGGAACATACTACAGCCCCAGGTGGCGAAGA 56307 Query 266 GCCGACATCG 275 |||||||||| Sbjct 56306 GCCGACATCG 56297 >seq14946 Length=52327 Score = 199 bits (220), Expect = 6e-49 Identities = 195/251 (78%), Gaps = 4/251 (2%) Strand=Plus/Plus Query 29 CAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAGTACAACTGGTGC 88 |||| || | || | | ||||||||| ||| || ||| |||||| ||||| ||| | Sbjct 52035 CAGCAGTTCTTCCATACCAACTTAGCTGCCCGGCGCTGCTATTGGCATAACAACCGGTAC 52094 Query 89 ACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCT- 147 |||| ||||| | ||| ||| |||||||||||||| || ||||||| || | ||| Sbjct 52095 ACCATAGGTTGGCCCAACCCAGTCCTCTCGTACTAGGGTTGGCTCCTCGCAGTTCTCCCT 52154 Query 148 ---ACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGT 204 || || ||| |||||| ||||||||||||| ||||||||| |||||| ||| ||| Sbjct 52155 TTAACACCAACGGTAGATAGGAACCGAACTGTCTCACGACGTTCTAAACCCAACTCACGT 52214 Query 205 GCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACG 264 || ||| ||| |||||||| || |||||||||||||| ||||| |||||||||| || | Sbjct 52215 ACCACTTGAATCGGCGAACAACCGAACCCTTGGGACCTTCTTCAACCCCAGGATGTGATG 52274 Query 265 AGCCGACATCG 275 || |||||||| Sbjct 52275 AGTCGACATCG 52285 >seq19533 Length=16711 Score = 188 bits (208), Expect = 1e-45 Identities = 211/278 (76%), Gaps = 7/278 (3%) Strand=Plus/Plus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCT 63 || |||||| ||||||| | |||||| |||||| ||| |||| ||| |||| | Sbjct 4963 GGTGGGCTTACTACTTAGATACTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAACA 5022 Query 64 ATGCACTTGG-CAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 | | ||| || | ||||||| ||||| |||| |||| | ||||||||||||||| Sbjct 5023 TTTACCATGGACACGATAACTGGTACACCAAAGGTGCGTCCTTATCGGTCCTCTCGTACT 5082 Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182 | ||| || ||||||||| || | | | || | |||| |||||||||||||| || Sbjct 5083 AGGGAAAGGTCCTCTCAATGCTCTAATGTCTACACCAGATATAGACCGAACTGTCTCACG 5142 Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGC----CCAACCCTTGGG 238 |||||||||||||||||| ||| || ||||||| |||||||| | ||||||||||| Sbjct 5143 ACGTTCTGAACCCAGCTCACGTACCGCTTTAATAGGCGAACAACCCAACCAACCCTTGGA 5202 Query 239 ACCTACTTCAGCCCCAGGATGA-GACGAGCCGACATCG 275 || |||| || ||||||| ||| || ||||||| |||| Sbjct 5203 ACATACTACAACCCCAGG-TGACGAAGAGCCGATATCG 5239 >seq18921 Length=19227 Score = 188 bits (208), Expect = 1e-45 Identities = 211/278 (76%), Gaps = 7/278 (3%) Strand=Plus/Plus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCT 63 || |||||| ||||||| | |||||| |||||| ||| |||| ||| |||| | Sbjct 12513 GGTGGGCTTACTACTTAGATACTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAACA 12572 Query 64 ATGCACTTGG-CAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 | | ||| || | ||||||| ||||| |||| |||| | ||||||||||||||| Sbjct 12573 TTTACCATGGACACGATAACTGGTACACCAAAGGTGCGTCCTTATCGGTCCTCTCGTACT 12632 Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182 | ||| || ||||||||| || | | | || | |||| |||||||||||||| || Sbjct 12633 AGGGAAAGGTCCTCTCAATGCTCTAATGTCTACACCAGATATAGACCGAACTGTCTCACG 12692 Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGC----CCAACCCTTGGG 238 |||||||||||||||||| ||| || ||||||| |||||||| | ||||||||||| Sbjct 12693 ACGTTCTGAACCCAGCTCACGTACCGCTTTAATAGGCGAACAACCCAACCAACCCTTGGA 12752 Query 239 ACCTACTTCAGCCCCAGGATGA-GACGAGCCGACATCG 275 || |||| || ||||||| ||| || ||||||| |||| Sbjct 12753 ACATACTACAACCCCAGG-TGACGAAGAGCCGATATCG 12789 >seq1779 Length=142649 Score = 167 bits (184), Expect = 4e-39 Identities = 187/250 (75%), Gaps = 4/250 (2%) Strand=Plus/Minus Query 29 CAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAGTACAACTGGTGC 88 |||| || | || | | ||||||||| ||| || ||| |||||| ||||| ||| | Sbjct 133952 CAGCAGTTCTTCCATACCAACTTAGCTGCCCGGCGCTGCTATTGGCATAACAACCGGTAC 133893 Query 89 ACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCT- 147 |||| ||||| | ||| ||| |||||||||||||| || ||| ||| || | ||| Sbjct 133892 ACCATAGGTTGGCCCAACCCAGTCCTCTCGTACTAGGGTTGGCTTCTCGCAGTTCTCCCT 133833 Query 148 ---ACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGT 204 || || ||| || | | ||||||||||| | ||||||||| |||||| ||| || Sbjct 133832 TTAACACCAACGGTAGACAAGAACCGAACTGTCCCACGACGTTCTAAACCCAACTCATGT 133773 Query 205 GCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACG 264 | ||| ||| |||||||| || ||||||||| |||| ||||| |||||||||| || | Sbjct 133772 ACTACTTGAATTGGCGAACAACCGAACCCTTGGAACCTTCTTCAACCCCAGGATGTGATG 133713 Query 265 AGCCGACATC 274 || ||||||| Sbjct 133712 AGTCGACATC 133703 >seq17130 Length=38798 Score = 152 bits (168), Expect = 8e-35 Identities = 176/235 (75%), Gaps = 8/235 (3%) Strand=Plus/Plus Query 47 AACTTAGCTTCCCAGCTATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATC 106 ||||||||| ||| || ||| |||||| ||||| ||| |||| | ||| | ||| | Sbjct 20159 AACTTAGCTGCCCGGCACTGCTATTGGCATAACAACAGGTAAACCATAAGTTGGCCCAAC 20218 Query 107 CCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTC---CT---ACGCCCACGACGG 160 || ||||||||||||| || |||||| ||| ||| || || || || Sbjct 20219 CCAGTCCTCTCGTACTTGGGTTTCCTCCTC--AAAGTTCTCTCTGTAACACCAACCGTAT 20276 Query 161 ATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCG 220 ||||| | ||||||||||| | ||||||| |||||| ||||||| || ||| ||| |||| Sbjct 20277 ATAGGAATCGAACTGTCTCACAACGTTCTAAACCCAACTCGCGTACCGCTTAAATCGGCG 20336 Query 221 AACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 |||| || |||||||||||||| ||||| |||| |||| || ||| ||||||| Sbjct 20337 AACAACCAAACCCTTGGGACCTTCTTCAATCCCACGATGTGATGAGTTGACATCG 20391 >seq853 Length=29821 Score = 87.8 bits (96), Expect = 3e-15 Identities = 99/130 (76%), Gaps = 2/130 (2%) Strand=Plus/Minus Query 72 GGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGC 131 |||| | ||| ||| ||||||||| | || |||||||||||| ||| | |||| || Sbjct 20937 GGCACGATAACGGGTATACCAGAGGTGCG-CCTTCCCGGTCCTCTTGTATTGAGGAAAGG 20879 Query 132 TCCTCTCAAATTTCCTACGCC-CACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTG 190 |||||||| || ||||| ||| |||||| ||||| |||||||| | |||||||| Sbjct 20878 CCCTCTCAATGCTCTAACGCCACACACCGGATATGGACCAAACTGTCTGACAACGTTCTG 20819 Query 191 AACCCAGCTC 200 ||| ||| || Sbjct 20818 AACTCAGTTC 20809 >seq6519 Length=249141 Score = 75.2 bits (82), Expect = 2e-11 Identities = 73/94 (78%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 98 TTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGA 157 |||||| ||| |||||||||||||| ||| | |||||||| || | |||||| Sbjct 235737 TTGTCCTTCCTGGTCCTCTCGTACTTGGGAAACGTCCTCTCATTGCTCTAATGCCCACAC 235678 Query 158 CGGATAGGGACCGAACTGTCTCGCGACGTTCTGA 191 |||||| |||||||||||||| |||||| ||| Sbjct 235677 CGGATATGGACCGAACTGTCTGATGACGTTTTGA 235644 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780597882356