Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16] 26,721 sequences; 604,217,145 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq16707 136 8e-30 seq4 89.7 1e-15 seq576 84.2 5e-14 >seq16707 Length=103149 Score = 136 bits (150), Expect = 8e-30 Identities = 197/279 (71%), Gaps = 18/279 (6%) Strand=Plus/Plus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 |||||||||||| |||||||||||||||||||| | || ||| || | Sbjct 10788 GGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCTCAGATACCGTCAT-----------T 10836 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 | ||| ||| | | |||||||||| || | |||| | ||||| ||| ||||| Sbjct 10837 G------TTTCTTCTCCGAGAAAAGAAGTTGACGACCCGTGGG-CCTTCCACCTCCACGC 10889 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | | ||| |||| || ||| |||||| || ||||| |||||||||||||||||| Sbjct 10890 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 10949 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||| ||| |||||||||||| ||| ||||| || | ||||||| || | ||| || Sbjct 10950 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 11009 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 | | | || ||| || || || | || |||| ||||| Sbjct 11010 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAAT 11048 >seq4 Length=83728 Score = 89.7 bits (98), Expect = 1e-15 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 138 CTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCT 197 || ||| ||| ||| || |||||||||| || ||| |||||||||||||| |||||||| Sbjct 1979 CTTTCGCCCACTGAGGAAAATTCCTCACTACTACCTTCCGTAGGAGTTTGGGCCGTGTCT 1920 Query 198 CAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCC 257 |||| ||| ||||| || | |||||| || | ||| ||| | | || ||| || Sbjct 1919 CAGTCCCAGTGTGGCTGATCATCCTCTTGGACCAGCTACTGATCATCGCCTTGGTAAGCT 1860 Query 258 GTTACCCCGCCTACTACCTAAT 279 || || | || |||| ||||| Sbjct 1859 ATTGCCTCACCAACTAGCTAAT 1838 >seq576 Length=26001 Score = 84.2 bits (92), Expect = 5e-14 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 145 CCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCC 204 |||||| || ||||| |||||||||||||||| ||| | |||||| ||||||||| || Sbjct 8439 CCATTGTGGAAAATTCCCCACTGCTGCCTCCCGTCGGAATCTGGACCATGTCTCAGTCCC 8498 Query 205 AATGTGGGGGACCTTCCTCTCAGA 228 ||||||| || | ||||||| || Sbjct 8499 AATGTGGCTGATCATCCTCTCGGA 8522 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1068514405952