Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16] 26,721 sequences; 604,217,145 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq6526 201 9e-47 seq8535 152 4e-32 seq3997 132 4e-26 >seq6526 Length=28452 Score = 201 bits (222), Expect = 9e-47 Identities = 395/580 (68%), Gaps = 12/580 (2%) Strand=Plus/Minus Query 61064 TGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCT 61123 ||||||| ||| |||| | | || ||| |||||||| ||||| ||||| || |||| Sbjct 22466 TGTTCCCGATCCAGTACCCGCAGATCTGGGAGATGTACAAGAAGGCTGAAGCGTCATTCT 22407 Query 61124 GGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATG--ACTGGGA----GCGTTTAT 61177 |||||| ||||||||| ||| |||| | ||| || | ||||||| || | | Sbjct 22406 GGACGGCGGAGGAGGTGGATCTGTCGCAGGACC--AACGCCACTGGGACGAGGCCCTCAC 22349 Query 61178 CGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTA 61237 || || || | || ||||| ||||| || | || ||||| ||||| || ||||| | Sbjct 22348 CGC-CGACGAGAAGCACTTCATCAAACACGTCCTCGCCTTCTTCGCCGCCTCCGACGGCA 22290 Query 61238 TCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTT 61297 ||||| ||||| | | |||||| | ||||||| ||||| | || ||||| Sbjct 22289 TCGTCCTCGAGAACCTCGCCGGCCGTTTCATGAAGGAGGTACAAGTTGCCGAAGCGCGGG 22230 Query 61298 GTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCA 61357 |||||||||||||| || ||||| ||||| ||||||| || |||||||| | || Sbjct 22229 CCTTCTACGGCTTCCAAATCGCCATCGAGAACATCCACTCCGAAATGTACAGCCTCCTGC 22170 Query 61358 TCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAATGCCATCGAGACGA 61417 |||| | ||||||||||| | ||| || || || | ||| | || |||||||| | Sbjct 22169 TCGAATCCTACATCAGGGACCCGGCCGAGAAGGACCGCCTCTTCCACGCGATCGAGACCA 22110 Query 61418 TACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTA 61477 | || ||| | || || | ||||| || || |||||| | || || | Sbjct 22109 TCCCTTGCGTGGAAAAAAAGGCCAAGTGGGCGTTGAAATGGATCGACGGTTCA---GAAT 22053 Query 61478 CATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGT 61537 | || | ||| || | | || || ||| ||||||| | || ||| ||| | Sbjct 22052 CGTTCGCCGAAAGACTCATCGCGTTCGCGTGCTTCGAGGGGATCTTCTTCTCCGGAAGCT 21993 Query 61538 TTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATG 61597 | ||| || |||||| | || || || || | ||||| ||||| |||||| || | Sbjct 21992 TCTGCGCGATATTTTGGCTCAAAAAGCGCGGGTTAATGCCGGGTCTCACCTTCTCGAACG 21933 Query 61598 AGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGC 61637 || |||| || || ||||||||| |||| || ||||| || Sbjct 21932 AGCTGATCTCGCGAGACGAGGGCTTGCACTGCGATTTCGC 21893 >seq8535 Length=22056 Score = 152 bits (168), Expect = 4e-32 Identities = 389/583 (67%), Gaps = 18/583 (3%) Strand=Plus/Minus Query 61064 TGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCT 61123 ||||||| || |||| | | || ||| |||||||| ||||| ||||| || |||| Sbjct 7172 TGTTCCCGATTCAGTACCCGCAGATCTGGGAGATGTACAAGAAGGCCGAAGCGTCGTTCT 7113 Query 61124 GGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATG--ACTGGGA----GCGTTTAT 61177 |||||| |||||| || ||| |||| | ||| || | ||||||| || | | Sbjct 7112 GGACGGCGGAGGAAGTGGATCTGTCGCAGGACC--AACGCCACTGGGATGAGGCCCTCAC 7055 Query 61178 CGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTA 61237 || || || | || ||||| | || || | || ||||| ||||| || || || | Sbjct 7054 CGC-CGACGAGAAGCACTTCATCACCCACGTCCTCGCCTTCTTCGCCGCCTCAGATGGCA 6996 Query 61238 TCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTT 61297 ||||| ||||| | | || ||| | ||||||| ||||| | || ||||| Sbjct 6995 TCGTCCTCGAGAACCTCGCTGGCCGATTCATGAAGGAGGTACAAGTCGCCGAAGCGCGCG 6936 Query 61298 GTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCA 61357 |||||||||||||| || ||||| ||||| ||||||| || |||||||| | || Sbjct 6935 CCTTCTACGGCTTCCAAATCGCCATCGAGAACATCCACTCCGAAATGTACAGCCTCCTGC 6876 Query 61358 TCGATACGTACATCAGGGA-GCGGGCG-GAACGTGAA-CGATTGTTCAATGCCATCGAGA 61414 |||| | ||||||| ||| ||| || ||| ||| || | ||| | || ||||||| Sbjct 6875 TCGAATCCTACATCAAGGACTCGGCCGAGAA---GAACCGCCTCTTCCACGCGATCGAGA 6819 Query 61415 CGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGG 61474 | | || ||| | || || | ||||| || || |||||| | || || | Sbjct 6818 CCGTCCCTTGCGTGGAAAAAAAGGCAAAGTGGGCGTTGAAGTGGATCGACGGTTCA---G 6762 Query 61475 CTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGAT 61534 | || | ||| | | | ||||| ||| || ||||| | || ||| ||| Sbjct 6761 AATCGTTCGCCGAAAGGCTCATCGCATTCGCGTGCGTGGAGGGGATCTTCTTCTCCGGAA 6702 Query 61535 CGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCA 61594 || ||| || |||||| | || || || || | ||||| ||||| || ||| | Sbjct 6701 GCTTCTGCGCGATATTTTGGCTCAAAAAGCGCGGGTTAATGCCGGGTCTCACTTTCTCGA 6642 Query 61595 ATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGC 61637 | ||| |||| || || ||||||||| |||| || ||||| || Sbjct 6641 ACGAGCTGATCTCGCGAGACGAGGGCTTGCACTGCGATTTCGC 6599 >seq3997 Length=108068 Score = 132 bits (146), Expect = 4e-26 Identities = 379/580 (65%), Gaps = 12/580 (2%) Strand=Plus/Minus Query 61064 TGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCT 61123 ||||||| ||| |||| | | || ||| |||||||| ||||| || || || |||| Sbjct 90358 TGTTCCCGATCCAGTACCCGTAGATCTGGGAGATGTACAAGAAGGCAGAGGCGTCGTTCT 90299 Query 61124 GGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGCGTT---TATCGA 61180 |||||| ||||||||| || | ||| ||| | ||||||| | || | Sbjct 90298 GGACGGCGGAGGAGGTGGACCTCTCCGCTGACCTTCGCCACTGGGACCAAACCCTAACCG 90239 Query 61181 GCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCG 61240 || || || ||||| || || | || ||||| || || || ||||| |||| Sbjct 90238 CCGACGAGAGGCACTTCATCTCCCACGTCCTCGCCTTCTTCGCAGCCTCCGACGGCATCG 90179 Query 61241 TCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTT 61300 || |||||| | | || ||| | ||||||| || || | ||||| || || Sbjct 90178 TCCTCGAGAATCTCGCCGGCCGCTTCATGAAGGAGGTCCAGGTCGCTGAGGCCCGCGCTT 90119 Query 61301 TCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCG 61360 |||| ||||||||||| || || ||||| ||||||| ||||||||||| | ||| ||| Sbjct 90118 TCTATGGCTTCCAGATCGCGATCGAGAACATCCACTCCGAGATGTACAGCCTCCTCCTCG 90059 Query 61361 ATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATAC 61420 | | ||||||| ||| | || | || | ||| | || |||||||| || | Sbjct 90058 AATCCTACATCAAGGACTCCTCCGAGAAGCACCGCCTCTTCCACGCAATCGAGACCATCC 89999 Query 61421 C---GGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTA 61477 | | |||||| ||| || | |||||| | || |||||| | | || | Sbjct 89998 CTTGCGTGGTGAA---GAAGGCCAAGTGGGCCCTGAAATGGATCGACGGCTCA---GAAT 89945 Query 61478 CATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGT 61537 | || | || || | |||| || ||| || ||||| | || ||| ||| | Sbjct 89944 CGTTCGCCGAGCGTCTCGTGGCGTTCGCGTGCGTGGAGGGGATCTTCTTCTCCGGAAGCT 89885 Query 61538 TTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATG 61597 | ||| || |||||| | ||||| || || | ||||| || ||||| ||| || | Sbjct 89884 TCTGCGCGATATTTTGGCTCAAGAAGCGCGGGTTAATGCCGGGACTGACTTTCTCGAACG 89825 Query 61598 AGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGC 61637 || | || || || ||||||||| | || || || || || Sbjct 89824 AGCTAATCTCGCGAGACGAGGGCCTTCACTGCGACTTCGC 89785 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397438527135440