Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14] 18,312 sequences; 192,487,774 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq11781 167 4e-39 seq10705 131 3e-28 >seq11781 Length=19248 Score = 167 bits (184), Expect = 4e-39 Identities = 208/285 (73%), Gaps = 0/285 (0%) Strand=Plus/Minus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65 ||||||| ||||| |||||| | | |||||| || |||||| |||||||| | Sbjct 17557 GCTTTCGTCTCTCAGTGTCAGTGTCGGCCCAGCAGAGTGCTTTCGCCGTTGGTGTTCTTT 17498 Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125 | || |||||||||||||||||| ||| | |||||| |||| || | | ||||||| Sbjct 17497 CCGATCTCTACGCATTTCACCGCTCCACCGGAAATTCCCTCTGCCCCTACCGTACTCAAG 17438 Query 126 AAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCT 185 |||||| | || | ||||||||||| | ||| || | ||||| Sbjct 17437 CTTGGTAGTTTCCACCGCCTGTCCAGGGTTGAGCCCTGGGATTTGACGGCGGACTTAAAA 17378 Query 186 TCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTA 245 || |||||| | |||||| |||||| | |||||||||||||||| ||| |||||| Sbjct 17377 AGCCACCTACAGACGCTTTACGCCCAATCATTCCGGATAACGCTTGCATCCTCTGTATTA 17318 Query 246 CCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||||||||||||||| ||||||||| ||||||||| ||| || Sbjct 17317 CCGCGGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATA 17273 >seq10705 Length=3272 Score = 131 bits (144), Expect = 3e-28 Identities = 202/288 (70%), Gaps = 8/288 (3%) Strand=Plus/Plus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 |||| |||||||| || ||||||| || |||| | | |||||||| ||| || Sbjct 2807 CCCATGCTTTCGCACCCCAGCGTCGGTAGGGACCCAGAGAGCTGCCTTCGCTTTTGGCGT 2866 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 |||| |||| |||| |||| ||| || |||||| |||||| | ||||| ||| Sbjct 2867 TCCTTCGTAGATCTGTAGATTTAACCCCTCCACACGAAATTCCACTCTCCTCTGTCTCAC 2926 Query 121 TCAAGAAAAACAGTTTCAAATGCAG---GCTATGGGTTGAGCCCATAGTTTTCACATCTG 177 ||||| || ||||| || ||| || | ||| | |||||| | Sbjct 2927 TCAAGTGAATTGGTTTCGAAAGCATTCCGCCACTTTTTGGCGAC-----TTTCACTTTCA 2981 Query 178 ACTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCT 237 || | | |||||||| ||||||||| |||| | | |||| | ||| |||||| || Sbjct 2982 ACCCGATTCACCGCCTACGTGCCCTTTACGCCCAGTCATTCCGAAGAACACTTGCCCCCC 3041 Query 238 ACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTC 285 |||||||||||||||||||||||| ||||||||| ||||| |||||| Sbjct 3042 CCGTATTACCGCGGCTGCTGGCACGGAGTTAGCCGGGGCTTCTTCCTC 3089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 828652972952