Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14] 18,312 sequences; 192,487,774 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq11474 717 0.0 seq4853 390 4e-106 seq12830 163 9e-38 seq11568 78.8 3e-12 >seq11474 Length=6881 Score = 717 bits (794), Expect = 0.0 Identities = 482/533 (90%), Gaps = 9/533 (2%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| || ||| ||||||||||||||| |||| | ||||||||||||||||||| Sbjct 688 CTTTTGTTCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTTATC 747 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 748 TTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCCTCCGCCCGGATC 807 Query 127 GGCCCGC-GAAGG--ACCTTAACGCCAGAAAATGGTCGGT-GAAGACCAGTTCCGCTTCA 182 ||||||| |||| ||||| ||| ||| || ||| | | || |||| |||| Sbjct 808 GGCCCGCCGAAGCGAACCTTGGGTCCAAAAAGAGG--GGTAGTACCCCGCCTCCGATTCA 865 Query 183 TTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCA 242 || ||||||||| |||| ||| ||||||||||||||||||||||||| ||||||| Sbjct 866 CGGAGTAAGTAAAATAACGTTAAAAGTAGTGGTATTTCACTTGCGCCGAA---GCTCCCA 922 Query 243 CTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGT 302 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 923 CTTATCCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGT 982 Query 303 CTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTA 362 ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| Sbjct 983 CTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTA 1042 Query 363 GATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGG 422 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1043 GACAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGG 1102 Query 423 CATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAAT 482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1103 CATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAAT 1162 Query 483 TTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATC 535 |||||||||||||||||||||||||||||||||||||||||||||| | |||| Sbjct 1163 TTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTTAGCATC 1215 >seq4853 Length=609 Score = 390 bits (432), Expect = 4e-106 Identities = 236/249 (95%), Gaps = 0/249 (0%) Strand=Plus/Plus Query 287 TCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTG 346 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1 TCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTG 60 Query 347 GTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCAC 406 ||||| || ||||||||| ||||||||||||||||||||||||||||| ||||||||||| Sbjct 61 GTTTCACTGGATAGTAGACAGGGACAGTGGGAATCTCGTTAATCCATTAATGCGCGTCAC 120 Query 407 TAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTAC 466 ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| | Sbjct 121 TAATTAGATGACGAGGCATTTTGCTACCTTGAGAGAGTCATAGTTACTCCCGCCGTTTCC 180 Query 467 CCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGC 526 || |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| Sbjct 181 CCTCGCTTGGTTGAATTTCTTCACTTTGACATTCAAAGCACTGGGTAGAAATCACATTGC 240 Query 527 GTCAACATC 535 || | |||| Sbjct 241 GTTAGCATC 249 >seq12830 Length=46328 Score = 163 bits (180), Expect = 9e-38 Identities = 98/103 (95%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 236 GCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCA 295 |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 38346 GCTCCCACTTATCCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAACTCA 38405 Query 296 ACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCT 338 |||||||||| ||||||||||||||| ||||||| |||||||| Sbjct 38406 ACAGGGTCTTTTTTCCCCGCTGATTCTGCCAAGCTCGTTCCCT 38448 >seq11568 Length=8215 Score = 78.8 bits (86), Expect = 3e-12 Identities = 81/106 (76%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 369 GACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTG 428 ||||| ||| |||||| |||||| ||| ||| ||| ||| ||| ||| |||| Sbjct 1795 GACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTC 1736 Query 429 GCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTT 474 ||||||||| || ||| | ||||||| |||||||||||| | |||| Sbjct 1735 GCTACCTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTT 1690 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634900562176