Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14] 18,312 sequences; 192,487,774 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq11474 612 6e-173 seq15832 223 1e-55 seq12314 172 2e-40 >seq11474 Length=6881 Score = 612 bits (678), Expect = 6e-173 Identities = 448/513 (87%), Gaps = 13/513 (3%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| |||| | || |||||| |||| |||||||||||||||||| Sbjct 5291 GTACTCATTCCAATTACCAGACTCGAA-GAGCCCGGTATTGTTATTTATTGTCACTACCT 5349 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5350 CCCCGTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 5409 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||| Sbjct 5410 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTCACCCGTTACCACCATGGTA 5469 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 ||||||||||||||||||||||||||||||||||||||||||||||| | ||||| || Sbjct 5470 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGATGCGTCGCCAGCA 5529 Query 241 C-AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAA------GGG 293 | |||||| |||||| ||| |||||| |||||||| || |||| || | | Sbjct 5530 CTAAGGCCTTGCGATCCGTCGAGTTATCATGAATCATCA--GAGCAACGGACAGAGTCCG 5587 Query 294 CGTTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATT 352 ||| | ||||||||||||||| || ||||||| ||||||||||||| | ||| ||||| Sbjct 5588 CGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATT 5647 Query 353 AGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGA 412 |||||||||||||| |||||||||| ||||| || ||| |||||| |||| |||||||| Sbjct 5648 AGCTCTAGAATTACTACGGTTATCCGAGTAGT-AGTTACCATCAAACAAACTATAACTGA 5706 Query 413 TTTAATGAGCCATTCGCAGTTTCACTGTATAGATT-GCTTATACTTAGACATGCATGGCT 471 ||||||||||||||||||||||||| || | ||| | | ||||||| |||||||||||| Sbjct 5707 TTTAATGAGCCATTCGCAGTTTCACAGTCTGAATTCGTTCATACTTACACATGCATGGCT 5766 Query 472 TAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||| Sbjct 5767 TAATCTTTGAGACAAGCATATGACTACTGGCAG 5799 >seq15832 Length=73105 Score = 223 bits (246), Expect = 1e-55 Identities = 207/260 (80%), Gaps = 11/260 (4%) Strand=Plus/Plus Query 90 CCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCC 149 ||| |||||||||||||||||||||| ||||||||| |||||||||||||||||||||| Sbjct 52651 CCTACTGCCTTCCTTGGATGTGGTAGTCGTTTCTCACGCTCCCTCTCCGGAATCGAACCT 52710 Query 150 TAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATA 209 |||||| | || ||||||| ||||||||| || ||||||| ||||||||||||| ||| Sbjct 52711 TAATTCTCTGTCACCCGTTACCACCATGGTAAGCTACTATCCGACCATCGAAAGTTTATA 52770 Query 210 GGGCAGAAATTTGAATGAACCATCGCCGGCTC-AAGGCCATGCGATTCGTTAAGTTATTA 268 | || |||||||||||| | |||| || | || ||| |||||| || ||||||| | Sbjct 52771 TGACATAAATTTGAATGATGCGTCGCTAGCACTAAAGCCTTGCGATCTGTCAAGTTATCA 52830 Query 269 TGAATCACCAAGGAGCCCCGAAGGGCGTTGG-------TTTTTTATCTAATAAATACACC 321 ||||||| || |||| || | | ||| | |||| ||||||||||| || | Sbjct 52831 TGAATCATCA--GAGCAACGGATAGAGTTTGCATCGACCTTTTGATCTAATAAATGCATC 52888 Query 322 CCTTCC-GAAGTCGGGGTTT 340 |||||| |||||||||||| Sbjct 52889 CCTTCCAAAAGTCGGGGTTT 52908 Score = 159 bits (176), Expect = 1e-36 Identities = 139/169 (82%), Gaps = 3/169 (2%) Strand=Plus/Plus Query 335 GGGTTTTTAGCATGTA-TTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTA 393 |||||| | ||||||| ||| || ||||| ||| ||||||||| ||| || | ||| | Sbjct 53363 GGGTTTGTTGCATGTAATTAACTTTAGAACTACTACGGTTATCAGAGTAATA-GTTACCA 53421 Query 394 TCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTT-A 452 |||| |||| |||||| ||||||| || ||||||||||||||| || | ||| || | Sbjct 53422 TCAACCAAACTATAACTAATTTAATAAGTCATTCGCAGTTTCACGGTCTCAATTCGTTCA 53481 Query 453 TACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGG 501 |||||| |||||||| |||||||||||||||||||||||||||||||| Sbjct 53482 TACTTATACATGCATAACTTAATCTTTGAGACAAGCATATGACTACTGG 53530 >seq12314 Length=68656 Score = 172 bits (190), Expect = 2e-40 Identities = 109/118 (92%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 46 TTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTG 105 ||||||||||||||||||||| || ||||||||||||||||||||||||| ||||| ||| Sbjct 60533 TTATTGTCACTACCTCCCCGTATCAGGATTGGGTAATTTGCGCGCCTGCTACCTTCTTTG 60592 Query 106 GATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTAC 163 |||||||||||| ||||| ||| ||||||||||||||||||||||||||| |||| || Sbjct 60593 GATGTGGTAGCCATTTCTTAGGTTCCCTCTCCGGAATCGAACCCTAATTCTCCGTCAC 60650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510123415552