Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14] 18,312 sequences; 192,487,774 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq14462 168 5e-37 >seq14462 Length=746139 Score = 168 bits (186), Expect = 5e-37 Identities = 555/846 (66%), Gaps = 24/846 (3%) Strand=Plus/Plus Query 61096 ATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGAC 61155 |||||||| ||||| || || || || ||||| | ||||| |||||| | || | ||| Sbjct 137397 ATGTACAAGAAGGCCGAGGCGTCGTTTTGGACTGCCGAGGAAGTCGATCTATCACAGGAC 137456 Query 61156 ATGAATGACTGGGAGCGTTTAT-CGAGCGGTGAACAACATTTCATTAAACATGTGTTGGC 61214 || |||||| |||| ||| ||| |||| ||| ||||| || ||||| || || Sbjct 137457 GGACGCGATTGGGAGAATTTAAACGA-CGGCGAACGACACTTCATCAAGCATGTCTTAGC 137515 Query 61215 GTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAAC--GTTTCGCGCAG 61272 ||||| ||||| || || || |||||| |||||| | || | | | ||| | Sbjct 137516 CTTCTTCGCCGCCTCTGATGGCATCGTCTTGGAGAATCT--TGCATCTCGATTCATGTCC 137573 Query 61273 GAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTC 61332 || || || || |||||||||||| ||||||||| || || || || || |||||| | Sbjct 137574 GATGTTCAGGTATCGGAGGCGCGTGCTTTCTACGGATTTCAAATCGCGATTGAGAATATT 137633 Query 61333 CACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAA 61392 || ||||||||||| ||| | || | ||||| ||||||| ||| ||| | || Sbjct 137634 CATTCGGAGATGTATAGTCTACTTCTTGATACCTACATCAAGGACAACAAAGAAAGAGAC 137693 Query 61393 CGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGC--GGAAAGCGGATTGGGCCT 61450 | | || || ||||| || || ||| ||| || ||||||| | ||||| Sbjct 137694 CATCTCTTTCGCGCAATCGAAACAATCCCG--TGTGTTGCCAAGAAAGCGCAATGGGCGA 137751 Query 61451 TCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGG 61510 | | ||||||| | | | | || |||| || || | | || || || | Sbjct 137752 TGACTTGGATCGACGG---ATCTCAAACCTTTGCGGAGCGTATCGTAGCCTTCGCCTGCG 137808 Query 61511 TCGAGGGTGTATTTTTCAGTGGATCGTTT-GCCGCAATCTTTTGGTTGAAGAAACGTGGA 61569 | || ||| | || ||| || | |||| | | || || ||| | || ||||| || Sbjct 137809 TTGAAGGTATCTTCTTCTCCGG-TAGTTTCTGCTCCATTTTCTGGCTTAAAAAACGAGGT 137867 Query 61570 CTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGT 61629 || ||||| || || |||||| ||| ||||| || ||||| ||||| ||| | ||||| Sbjct 137868 CTCATGCCTGGACTCACCTTCTCCAACGAGTTAATCTCACGAGACGAAGGCCTCCATTGC 137927 Query 61630 GATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATC-GTCCGTCGGAGGAGCGTGT 61688 ||||| ||| | |||| | ||| | || | ||| | | |||||||| || Sbjct 137928 GATTTCGCTTGTCTGCTCTACAA----TCTCCTGAGAACCAAATTAACAGAGGAGCGCGT 137983 Query 61689 G-GGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGC 61747 | || | || || | || || || ||||| ||| ||| || ||||| | | Sbjct 137984 GAAGTCA-ATCGTATGCGACGCAGTGGAGATCGAGAGGGAGTTTGTGTGCGACGCGCTTC 138042 Query 61748 CCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCG 61807 | | | | | || |||||| ||| |||||| || || || ||||| || || | Sbjct 138043 CGTGCGCGTTGGTTGGGATGAATCGTGACCTAATGAGTCAATACATCGAATTCGTAGCGG 138102 Query 61808 ACCGTCTGTT-GGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGAT 61866 | || |||| ||| || ||||| | || | ||| | | || || |||||| Sbjct 138103 ATCGGTTGTTGGGTGCGTTAGGGTACGGTAAGG-TGTATGGTGTGTCTAATCCGTTTGAT 138161 Query 61867 TTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGAC 61926 | ||||| | ||||||||| | || || || || || |||||||| | || || || Sbjct 138162 TGGATGGAGCTTATTTCGCTGCAGGGTAAAACAAACTTCTTCGAGAAGAGAGTTGGAGAT 138221 Query 61927 TATCAA 61932 || ||| Sbjct 138222 TACCAA 138227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397479271767680