Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14] 18,312 sequences; 192,487,774 total letters Query= NC_031903.1 Length=172345 Score E Sequences producing significant alignments: (Bits) Value seq11797 616 2e-171 seq17927 556 1e-153 seq12403 116 4e-21 seq14836 113 5e-20 >seq11797 Length=28381 Score = 616 bits (682), Expect = 2e-171 Identities = 716/966 (74%), Gaps = 0/966 (0%) Strand=Plus/Minus Query 159830 AACCGCCTCTATGTCGGTTGGTTCGGCGTCCTGATGATCCCAACTCTGTTGGCAGCAACT 159889 ||||| || || | || ||||| || || |||||||||| || | ||| | |||||| Sbjct 1373 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACT 1314 Query 159890 ATCTGCTTCATCGTCGCCTTCATCGCTGCTCCCCCTGTGGACATCGATGGCATCCGTGAA 159949 | || || |||| || || |||||||| || || || || ||||| || |||||| Sbjct 1313 TCCGTTTTTATTATCGCATTTATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAA 1254 Query 159950 CCCGTCGCTGGTTCACTCATGTACGGTAACAACATCATCTCTGGTGCAGTTGTTCCCTCT 160009 || || |||| || || | ||||| ||||| || || || |||||| || |||| || Sbjct 1253 CCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTATTTCAGGTGCAATTATTCCTACT 1194 Query 160010 TCCAACGCAATTGGTCTTCACTTCTATCCCATTTGGGAAGCCGCATCGCTCGACGAGTGG 160069 || || || ||| | || || || || ||||||||||| ||||| | || || ||| Sbjct 1193 TCTGCAGCTATCGGTTTGCATTTTTACCCAATTTGGGAAGCTGCATCCGTTGATGAATGG 1134 Query 160070 CTCTATAACGGTGGTCCTTTCCAACTCGTAGTCTTCCACTTCCTGATCGGCATCTATGCC 160129 || || ||||||||||||| |||| | || | ||||| | | || | | Sbjct 1133 CTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGT 1074 Query 160130 TATATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCCTGGATCTGTGTT 160189 ||||||||||||||||||||||| || |||| | ||||||||||| ||||| |||| Sbjct 1073 TATATGGGTCGTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCGTCCTTGGATTGCTGTT 1014 Query 160190 GCATACTCTGCTCCAGTCGCTGCTGCTTCTGCTGTATTCCTCGTCTACCCCTTCGGTCAG 160249 ||||| || ||||| || || |||||| |||| || ||| | |||| || | ||||| Sbjct 1013 GCATATTCAGCTCCTGTTGCAGCTGCTACTGCAGTTTTCTTGATCTATCCTATTGGTCAA 954 Query 160250 GGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGCTTGTA 160309 || || || |||| ||||||||| || |||||||||||||| |||| ||| ||||| Sbjct 953 GGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTA 894 Query 160310 TTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGGGTA 160369 ||||| || || || || || |||||||| || || |||||| | ||||| ||||| ||| Sbjct 893 TTCCAGGCTGAGCATAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 834 Query 160370 TTCGGTGGATCTCTGTTCTCTGCTATGCATGGATCTCTGGTTACTTCTAGTCTCGTCAGA 160429 ||||| || || || || |||||||||||| ||| |||| ||||||||| | |||| Sbjct 833 TTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCTTTGGTAACTTCTAGTTTGATCAGG 774 Query 160430 GAGACGACAGAAACTGAGTCCCAGAACTATGGTTACAAGTTCGGTCAAGAGGAAGAGACT 160489 || || ||||||| ||| || || | ||||||| ||||||||||| ||||| ||| Sbjct 773 GAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAGAAGAAACT 714 Query 160490 TACAACATCGTCGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCATCCTTT 160549 |||||||| || || || ||||| || || || || ||||||||||||||||| || Sbjct 713 TACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTC 654 Query 160550 AACAACTCACGCTCTCTGCACTTCTTCCTCGCTGCTTGGCCTGTTGTTGGAATCTGGTTC 160609 ||||| || || ||| | || |||||| | || |||||||| || || || || ||||| Sbjct 653 AACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTTT 594 Query 160610 ACTGCCCTTGGTGTTTCTACCATGGCATTCAATCTCAATGGTTTCAACTTCAACCAGTCC 160669 ||||| | ||| || ||| |||||||| || | ||||| ||||| |||||||| || Sbjct 593 ACTGCTTTAGGTATTAGTACTATGGCATTTAACTTAAATGGATTCAATTTCAACCAATCT 534 Query 160670 ATCTTGGACAACCAAGGACAAGTTCTGAACACTTGGGCAGACGTGCTTAACCGCGCTGGT 160729 | | || | ||||| | ||| | || |||||||| || | ||||||| ||| Sbjct 533 GTAGTTGATAGTCAAGGGCGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAAC 474 Query 160730 CTGGGCATGGAAGTCATGCACGAGCGTAACGCTCACAACTTCCCTCTCGACCTTGCTGCT 160789 || || |||||||| ||||| || ||||| ||||||||||||||||| ||||| |||| | Sbjct 473 CTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGTT 414 Query 160790 GCTGAG 160795 | |||| Sbjct 413 GTTGAG 408 >seq17927 Length=56337 Score = 556 bits (616), Expect = 1e-153 Identities = 723/993 (73%), Gaps = 5/993 (1%) Strand=Plus/Plus Query 161545 GATCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTTGCT 161604 || || ||||||||||| || |||||||| || | || ||||| ||| ||| ||||| Sbjct 4034 GACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTTCCTTGTGCCTATTTTGCT 4093 Query 161605 ATTGGCGGTTGGCTTACTGGCACGACTTTCGCTACGAGCTGGTATACCCATGGACTCGCT 161664 | || |||||| | || || || || || | || |||||||| |||||| | || Sbjct 4094 TTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGGTATACTCATGGATTGGCC 4153 Query 161665 AGTTCCTATCTTGAGGGTGCAAATTTTCTTACAGCGGCAGTTAGCACTCCAGCTGACGCT 161724 ||||||||| | || ||| |||||| | || || || ||| ||||| ||| | | Sbjct 4154 AGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCGGTTTCTACTCCTGCTAATAGT 4213 Query 161725 ATGGGTCATTCTCTTCTTCTT-CTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGTG 161783 | | ||||| || || || || ||||||||||| || ||||| ||||| | || Sbjct 4214 TTAGCGCATTCG-TTGTTGTTACTGTGGGGTCCTGAAGCACAAGGAGATTTTACTCGTTG 4272 Query 161784 GATCCAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCACGGGGCTTTCGCTCTGATTGG 161843 | ||| | || || || |||| |||||| || |||||||| |||||||| | || || Sbjct 4273 GTGTCAATTAGGTGGTCTGTGGACTTTTGTTGCTCTCCACGGCGCTTTCGCATTAATAGG 4332 Query 161844 ATTCATGCTTCGTCAGTTTGAACTTGCTCG-TCTTATCGGTATCCGTCCTTACAATGCTA 161902 || ||| | ||||| |||||||||||||| ||| || | | || ||||| ||||| | Sbjct 4333 TTTTATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAAT-TGCGACCTTATAATGCAA 4391 Query 161903 TTGCTTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTTCTCATATATCCTCTGGGAC 161962 | || ||||||||||| |||||||||||||| ||||| || || ||||| || || | Sbjct 4392 TCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTCTTCCTAATTTATCCACTAGGTC 4451 Query 161963 AGTCGTCCTGGTTCTTCGCGCCATCGTTTGGGGTTGCCGCTATTTTCAGGTTCTTACTTT 162022 | || |||||||| ||||| ||||| || || |||||||| | || | || | Sbjct 4452 AATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTATTTTTCGATTTATCCTCT 4511 Query 162023 TCCTACAAGGTTTCCACAATTGGACGCTTAATCCGTTCCACATGATGGGTGTCGCAGGTA 162082 | | ||||| || || |||||||| | || || || || |||||||| ||||| ||| Sbjct 4512 TTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATGGGAGTCGCCGGTG 4571 Query 162083 TCTTGGGTGGTGCTTTGCTCTCTGCTATTCACGGTGTGACTGTTGAAAACACGCTCTACC 162142 | |||| | ||| |||| | |||||||| |||| ||||| ||||| || | | Sbjct 4572 TACTGGGCGCGGCTCTGCTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTTG 4631 Query 162143 AAGATGGTGAACAAGCAAATACTTTCAAGGCTTTTGACTCTACGCAAGAGGAGGAGACTT 162202 |||||||||| |||||||| ||| |||||| || | || |||| || || |||| Sbjct 4632 AAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAAACTT 4691 Query 162203 ACTCGATGGTTACTGCGAACCGTTTCTGGTCACAGATCTTCGGTATTGCTTTTAGTAATA 162262 | || ||||| || || ||||| || |||||||| ||||| || |||||||| |||| Sbjct 4692 ATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTGGGGTTGCTTTTTCCAATA 4751 Query 162263 AGCGTTGGTTGCATTTCTTTATGCTCTTCGTTCCCGTCATGGGTCTCTGGACAAGTTCTA 162322 | |||||||| |||||||||||| | || || || || | ||| | |||| ||| || Sbjct 4752 AACGTTGGTTACATTTCTTTATGTTATTTGTACCGGTAACTGGTTTATGGATGAGTGCTC 4811 Query 162323 TCGGTATTATTGGACTCGCTCTTAATCTTCGTGCTTACGACTTTGTATCTCAGGAGATTC 162382 | || | | || || ||| | || || || || || |||||||| || ||||| || | Sbjct 4812 TTGGAGTAGTCGGTCTAGCTTTGAACCTACGCGCCTATGACTTTGTTTCCCAGGAAATCC 4871 Query 162383 GTGCAGCGGAGGATCCTGAATTTGAAACCTTCTACACCAAGAATATCCTCTTGAATGAAG 162442 |||||||||| ||||| |||||||| || |||||||| || ||||| || || || |||| Sbjct 4872 GTGCAGCGGAAGATCCGGAATTTGAGACTTTCTACACTAAAAATATTCTTTTAAACGAAG 4931 Query 162443 GTCTTCGTGCATGGTTGGCACCAGTTGATCAACCGCATGAGAACTTTGTATTCCCTGAGG 162502 || ||||||| ||| |||| | ||||| || ||||| ||| || |||||||||||| Sbjct 4932 GTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGG 4991 Query 162503 AAGTTCTGCCTAGAGGTAACGCACTGTGAATGG 162535 | ||||| || | || ||||| || | ||||| Sbjct 4992 AGGTTCTACCACGTGGAAACGCTCT-TTAATGG 5023 >seq12403 Length=479826 Score = 116 bits (128), Expect = 4e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 160954 TGTGAGGATGATCAATATGTCCTTGACGCTGCTGATGAAGCAGGTGTTGACGGACCCTAC 161013 ||||| |||||| ||||| ||||| || ||||| ||||| ||| |||| || ||| Sbjct 152746 TGTGATGATGATGTTTATGTTCTTGATGCAGCTGAAGAAGCTGGTCTTGATTTGCCTTAC 152687 Query 161014 TCCTGTCGTGCTGGTGCTTGCTCTACTTGTGCTGGTAAGATTGAGAGTGGTACTGTAGAT 161073 || || ||||||||| |||| || | |||||| || || | | | ||| |||| ||| Sbjct 152686 TCGTGCCGTGCTGGTTCTTGTTCAAGTTGTGCAGGGAAAGTAGTGGCTGGATCTGTTGAT 152627 Query 161074 CAATCTGATCAATCTTTCCTGGATGATGATCAACTTGAATCA-GGATTTGTCCTGACCTG 161132 ||||| ||||| ||| | || ||||| || | || | | |||| ||| || || || Sbjct 152626 CAATCAGATCAGAGTTTTTTAGAAGATGAACAGAT-GAGTGAAGGATATGTTCTTACTTG 152568 Query 161133 CGTTGCTTATCCCACTTCTGATGTAACTATTCTTGCCGAGCAAGAAGA 161180 || || ||||| ||||||||||| ||||| | | |||||||| Sbjct 152567 TGTAGCGTATCCAACTTCTGATGTTGTTATTCAAACACATCAAGAAGA 152520 >seq14836 Length=433140 Score = 113 bits (124), Expect = 5e-20 Identities = 149/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 160954 TGTGAGGATGATCAATATGTCCTTGACGCTGCTGATGAAGCAGGTGTTGACGGACCCTAC 161013 ||||| || ||| || || |||||||||||||| ||||| || ||||| || | | Sbjct 174403 TGTGATGACGATGTCTACGTTCTTGACGCTGCTGAAGAAGCTGGAATTGACTTGCCTTTC 174462 Query 161014 TCCTGTCGTGCTGGTGCTTGCTCTACTTGTGCTGGTAAGATTGAGAGTGGTACTGTAGAT 161073 || || ||| ||||| |||| || | ||||||||||| ||| | ||||| | | || Sbjct 174463 TCTTGCCGTTCTGGTTCTTGTTCAAGCTGTGCTGGTAAAGTTGTGTCTGGTAATATTGAC 174522 Query 161074 CAATCTGATCAATC-TTTCCTGGATGATGATCAACTTGAATCAGGATTTGTCCTGACCTG 161132 || | ||| |||| ||||| ||||||||||| | | | || | |||||| || || Sbjct 174523 CAGACAGAT-AATCAGTTCCTTGATGATGATCAGATGGCTGCTGGCTATGTCCTCACTTG 174581 Query 161133 CGTTGCTTATCCCACTTCTGATGT 161156 || ||||| || ||||||||||| Sbjct 174582 TGTAGCTTACCCTACTTCTGATGT 174605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 551249790033600