Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14]
18,312 sequences; 192,487,774 total letters
Query= NC_031906.1
Length=198190
Score E
Sequences producing significant alignments: (Bits) Value
seq11797 587 1e-162
seq17927 536 2e-147
>seq11797
Length=28381
Score = 587 bits (650), Expect = 1e-162
Identities = 728/988 (74%), Gaps = 10/988 (1%)
Strand=Plus/Minus
Query 188851 TTCTGCGAATGGGTCACCTCTACTAACAACCGTCTGTATGTCGGTTGGTTCGGTGTCCTG 188910
||||| | ||| | ||| ||| | |||||||| || | || ||||| ||||| ||
Sbjct 1400 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1341
Query 188911 ATGATCCCTACGCTTCTCG-CTGCAACCATCTGCTTCATCGTCGCCTTTGTCGCTGCACC 188969
||||||||||| ||| | | | ||||| | || || |||| ||| | ||||| ||
Sbjct 1340 ATGATCCCTAC-CTTATTGACCGCAACTTCCGTTTTTATTATCGCATTTATTGCTGCTCC 1282
Query 188970 CCCTGTAGACATTGATGGCATCCGCGAACCCGTCGCTGGTTCACTCATGTATGGAAACAA 189029
|| ||||| |||||||| || || ||||| || |||| || || | || ||||||||
Sbjct 1281 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAA 1222
Query 189030 CATCATCTCTGGTGCTGTTGTCCCTTCATCCAACGCAATTGGTCTTCACTTCTACCCCAT 189089
|| || || ||||| || | ||| | || || || ||| | || || ||||| ||
Sbjct 1221 TATTATTTCAGGTGCAATTATTCCTACTTCTGCAGCTATCGGTTTGCATTTTTACCCAAT 1162
Query 189090 CTGGGAAGCCGCCTCACTCGATGAGTGGCTCTACAACGGTGGTCCTTTCCAACTGGTAGT 189149
|||||||| || || | ||||| ||||| |||||||||||||||| |||| | ||
Sbjct 1161 TTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGTGGTCCTTATGAACTAATTGT 1102
Query 189150 CTTCCACTTCCTCATCGGCATCTACGCCT---ACATGGGTCGTGAGTGGGAACTCTCTTA 189206
| ||||| | | || | || || | | |||||||||||||||||||| ||
Sbjct 1101 TCTACACTTTTTACTTGG--TGTA-GCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTT 1045
Query 189207 CCGTCTCGGTATGCGTCCTTGGATCTGCA-TTGCTTACTCTGCACCTGTTGCAGCAGCAT 189265
|||| | ||||||||||||||||| ||| |||| || || || ||||||||||| ||
Sbjct 1044 CCGTTTGGGTATGCGTCCTTGGAT-TGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTA 986
Query 189266 CCGCAGTCTTTCTGGTCTATCCTTTTGGTCAAGGTTCTTTCTCTGACGCAATGCCCTTGG 189325
| ||||| || || |||||||| |||||||||| || ||||| | ||||| | |
Sbjct 985 CTGCAGTTTTCTTGATCTATCCTATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAG 926
Query 189326 GTATCAGTGGAACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGC 189385
| ||| ||| || ||||||| |||| |||| ||||| || ||||| ||||| || ||||
Sbjct 925 GAATCTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCATAACATTCTTATGC 866
Query 189386 ACCCCTTCCACATGCTGGGAGTCGCAGGTGTCTTCGGTGGTTCACTGTTCTCCGCAATGC 189445
|||| || |||||| | || || || ||||| ||||| || || || || || ||||
Sbjct 865 ACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGC 806
Query 189446 ATGGTTCACTCGTTACCTCTTCACTGGTTCGTGAAACCACTGAAACCGAGTCCCAGAACT 189505
||||||| | || || ||| || | | |||||||| |||| || || ||
Sbjct 805 ATGGTTCTTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATG 746
Query 189506 ATGGTTACAAGTTTGGACAAGAAGAAGAAACGTACAACATCGTTGCTGCTCATGGATATT 189565
| ||||||| || || |||||||||||||| |||||||| || ||||||||||| ||||
Sbjct 745 AAGGTTACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCATGGTTATT 686
Query 189566 TCGGTCGTCTTATCTTCCAATATGCATCGTTCAACAACTCCCGTTCACTTCACTTCTTCC 189625
| || || | |||||||||||||| |||||||| || ||||| | || ||||||
Sbjct 685 TTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCT 626
Query 189626 TCGCTGCCTGGCCAGTCGTGGGTATCTGGTTTACCGCCCTCGGCGTCAGCACCATGGCAT 189685
| || || ||||| || || ||||| |||||||| || | || | || || |||||||
Sbjct 625 TAGCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCAT 566
Query 189686 TCAACCTCAATGGGTTCAACTTCAATCAATCCATTCTTGATGGTCAAGGTCGTGTTCTGA 189745
| ||| | ||||| ||||| ||||| ||||| | ||||| ||||||| |||||| | |
Sbjct 565 TTAACTTAAATGGATTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGGCGTGTTATTA 506
Query 189746 ACACATGGGCAGACGTTCTCAACCGTGCTGGTCTTGGTATGGAAGTCATGCATGAGCGTA 189805
| || ||||| || || | ||||||||| |||||||||||||| |||||||| ||||
Sbjct 505 ATACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTA 446
Query 189806 ACGCTCACAACTTCCCTCTTGATCTGGC 189833
| ||||||||||||||||| || || ||
Sbjct 445 ATGCTCACAACTTCCCTCTAGACCTAGC 418
>seq17927
Length=56337
Score = 536 bits (594), Expect = 2e-147
Identities = 729/1014 (72%), Gaps = 2/1014 (0%)
Strand=Plus/Plus
Query 189987 TTTGACATCCTTGATGACTGGCTTAAACGAGATCGCTTTGTCTTTGTGGGTTGGTCTGGA 190046
||||| || | ||||||||| | | || ||||| || ||||| |||||||||||
Sbjct 4004 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGT 4063
Query 190047 TTACTTCTTTTTCCCACTGCTTATCTCGCAATTGGTGGCTGGCTTACTGGCACGACGTTT 190106
|| | || ||||| ||| ||| | || | || || ||| | || || || || |||
Sbjct 4064 CTATTGCTCTTTCCTTGTGCCTATTTTGCTTTAGGGGGTTGGTTCACAGGTACAACCTTT 4123
Query 190107 GCTACAAGCTGGTACACCCACGGACTCGCAAGTAGTTACCTTGAGGGTGCTAATTTTCTT 190166
| || ||||| || || ||| | || ||| || | || ||| |||||| |
Sbjct 4124 GTAACTTCATGGTATACTCATGGATTGGCCAGTTCCTATTTAGAAGGTTGCAATTTTTTA 4183
Query 190167 ACAGCGGCTGTGTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGT 190226
|| || || || || || |||||| || | | | ||||| | | |||| ||||||
Sbjct 4184 ACCGCTGCGGTTTCTACTCCTGCTAATAGTTTAGCGCATTCGTTGTTGTTACTGTGGGGT 4243
Query 190227 CCTGAATCTCAAGGCGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGGCTTTTGTG 190286
|||||| | ||||| ||||| | ||| ||| | || || || ||| |||||||
Sbjct 4244 CCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTT 4303
Query 190287 GCGCTCCACGGGGCTTTCGCTCTAATTGGATTCATGCTTCGTCAGTTTGAACTGGCACG- 190345
|| |||||||| |||||||| |||| || || ||| | ||||| |||||||| || ||
Sbjct 4304 GCTCTCCACGGCGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGA 4363
Query 190346 TCTCATCGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGT 190405
||| || | | || ||||| ||||| || || ||||||||||| || |||||||||||
Sbjct 4364 TCTGTTCAAT-TGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGT 4422
Query 190406 TAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTCTTCGCGCCATCCTTCGG 190465
| ||||| || || || || || |||||||| |||||||||| ||||| || ||
Sbjct 4423 TTCTGTCTTCCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGG 4482
Query 190466 TGTGGCAGCGATCTTCCGCTTCCTCCTCTTCTTGCAGGGCTTCCATAACTGGACGCTGAA 190525
||| || || || || || || ||||||| || || || || ||||| ||||| ||||
Sbjct 4483 TGTAGCGGCTATTTTTCGATTTATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAA 4542
Query 190526 CCCCTTCCACATGATGGGTGTTGCAGGTATCCTGGGAGGAGCACTACTGTCAGCAATCCA 190585
||| || || |||||||| || || ||| | ||||| | || || || | || || ||
Sbjct 4543 CCCATTTCATATGATGGGAGTCGCCGGTGTACTGGGCGCGGCTCTGCTATGCGCTATTCA 4602
Query 190586 TGGTGTGACTGTAGAGAATACTTTGTATGAAGATGGTGAACAAGCAAACACGTTTAAAGC 190645
||||| |||||||| |||||||| | |||||||||||| ||||| || || ||
Sbjct 4603 TGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGC 4662
Query 190646 ATTCGACTCTACACAAGAGGAAGAGACCTATTCGATGGTCACTGCCAACCGTTTCTGGTC 190705
|| || | || |||| ||||| || ||||| |||||||| || ||||| || |||||
Sbjct 4663 TTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTC 4722
Query 190706 TCAAATCTTTGGTGTTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTTATGCTCTTTGT 190765
||||||||||| ||||| || ||||| | ||||| |||||||||||| | |||||
Sbjct 4723 ACAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGT 4782
Query 190766 TCCTGTTATGGGTCTGTGGACTTCTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCG 190825
|| || | ||| | |||| | | | || | | ||||| ||| | ||||| ||
Sbjct 4783 ACCGGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCTTTGAACCTACG 4842
Query 190826 TGCTTATGACTTTGTATCCCAAGAGATCAGAGCAGCAGAAGATCCAGAGTTCGAGACTTT 190885
|| ||||||||||| ||||| || ||| | ||||| |||||||| || || ||||||||
Sbjct 4843 CGCCTATGACTTTGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTT 4902
Query 190886 TTACACAAAAAATATACTTTTGAATGAAGGTCTTCGTTCATGGTTGGCACCTGTTGATCA 190945
||||| |||||||| ||||| || |||||| ||||| | ||| |||| || |||||
Sbjct 4903 CTACACTAAAAATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCA 4962
Query 190946 ACCCCATGAGAATTTTGTATTTCCAGAAGAAGTATTGCCAAGAGGCAACGCTCT 190999
|| ||||| || || |||| || || || || | ||| | || ||||||||
Sbjct 4963 GCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 5016
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633934859088000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |