Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14]
18,312 sequences; 192,487,774 total letters
Query= NC_031922.1
Length=174830
Score E
Sequences producing significant alignments: (Bits) Value
seq11797 691 0.0
seq17927 527 7e-145
seq14836 102 9e-17
>seq11797
Length=28381
Score = 691 bits (766), Expect = 0.0
Identities = 735/967 (76%), Gaps = 2/967 (0%)
Strand=Plus/Minus
Query 160599 AATCGTCTTTACGTCGGTTGGTTCGGTGTGCTGATGATCCCAACTCTGTTGGCAGCAACC 160658
|| ||||||||| | || ||||| ||||| |||||||||| || | ||| | |||||
Sbjct 1373 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACT 1314
Query 160659 GTCTGCTTTATTACTGCGTTCGTTGCTGCTCCCCCCGTGGACATCGACGGTATCCGTGAA 160718
| ||||||| || || |||||||||| || || || || || ||||| ||||||
Sbjct 1313 TCCGTTTTTATTATCGCATTTATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAA 1254
Query 160719 CCCGTTGCTGGTTCACTGATGTATGGAAACAACATCATCTCTGGTGCAGTTGTTCCTTCT 160778
|| ||| |||| || || | || |||||||| || || || |||||| || ||||| ||
Sbjct 1253 CCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTATTTCAGGTGCAATTATTCCTACT 1194
Query 160779 TCCAACGCAATTGGTCTTCACTTCTACCCCATTTGGGAAGCTGCATCTCTTGATGAATGG 160838
|| || || ||| | || || ||||| ||||||||||||||||| |||||||||||
Sbjct 1193 TCTGCAGCTATCGGTTTGCATTTTTACCCAATTTGGGAAGCTGCATCCGTTGATGAATGG 1134
Query 160839 CTCTACAATGGTGGTCCTTACCAACTGGTCGTATTTCACTTCCTGATCGGCATCTTCTGC 160898
|| ||||| ||||||||||| |||| | || | ||||| | | || | ||
Sbjct 1133 CTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGT 1074
Query 160899 TACATGGGTCGCGAGTGGGAACTTTCCTACCGCCTCGGCATGCGCCCCTGGATCTGC-GT 160957
|| |||||||| |||||||||||| | ||| | || ||||| || ||||| ||| ||
Sbjct 1073 TATATGGGTCGTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCGTCCTTGGAT-TGCTGT 1015
Query 160958 TGCATATTCTGCACCTGTTGCTGCTGCGAGTGCAGTATTCCTCGTCTATCCTTTCGGTCA 161017
||||||||| || |||||||| ||||| | |||||| ||| | |||||||| | |||||
Sbjct 1014 TGCATATTCAGCTCCTGTTGCAGCTGCTACTGCAGTTTTCTTGATCTATCCTATTGGTCA 955
Query 161018 AGGTTCTTTCTCTGATGGTATGCCCCTGGGTATCTCTGGTACCTTCAACTTCATGCTTGT 161077
||| || |||||||||||||| || || ||||||||||| |||||||||||| ||||
Sbjct 954 AGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGT 895
Query 161078 CTTCCAGGCAGAACACAACATCCTGATGCACCCCTTCCACATGTTGGGTGTTGCTGGTGT 161137
|||||||| || || ||||| || |||||||| || |||||||| ||||| ||||||||
Sbjct 894 ATTCCAGGCTGAGCATAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGT 835
Query 161138 CTTCGGTGGTTCTCTGTTCTCCGCAATGCATGGTTCACTGGTTACTTCTTCCCTGGTTCG 161197
||||| || || || || || ||||||||||| |||| |||||| || | |
Sbjct 834 ATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCTTTGGTAACTTCTAGTTTGATCAG 775
Query 161198 TGAAACCACTGAGAACGAGTCCCAGAACTATGGTTACAAGTTTGGTCAAGAAGAAGAGAC 161257
|||||||| || || || || || | ||||||| || |||||||||||||| ||
Sbjct 774 GGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAGAAGAAAC 715
Query 161258 CTACAACATCGTCGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCCTT 161317
|||||||| || |||||||||||||| || || || ||||||||||||| ||| ||
Sbjct 714 TTACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTT 655
Query 161318 CAACAACTCCCGTTCGTTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTT 161377
|||||| || ||||| || || |||||| | || || ||||| || || ||||| |||||
Sbjct 654 CAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTT 595
Query 161378 CACTGCACTTGGTGTCTCCACCATGGCATTCAACCTGAACGGATTCAACTTCAACCAGTC 161437
||||| | ||| | || |||||||| ||| | || |||||||| |||||||| ||
Sbjct 594 TACTGCTTTAGGTATTAGTACTATGGCATTTAACTTAAATGGATTCAATTTCAACCAATC 535
Query 161438 CATCATGGATGGTCAGGGCAAAGTCCTGAACACCTGGGCTGACGTTCTGAATCGTGCTAA 161497
| | ||| |||| || || | || || |||||||| || | || ||||||||
Sbjct 534 TGTAGTTGATAGTCAAGGGCGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAA 475
Query 161498 CCTTGGTATGGAAGTAATGCACGAGCGTAATGCTCACAACTTCCCTCTGGATCTCGCTGC 161557
||||||||||||||| ||||| || ||||||||||||||||||||||| || || ||||
Sbjct 474 CCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGT 415
Query 161558 TGCTGAG 161564
|| ||||
Sbjct 414 TGTTGAG 408
>seq17927
Length=56337
Score = 527 bits (584), Expect = 7e-145
Identities = 714/991 (72%), Gaps = 8/991 (1%)
Strand=Plus/Plus
Query 163917 GATCGCTTTGTCTTTGTGGGTTGGTCTGGATTACTTCTTTTTCCCACTGCTTATCTTGCA 163976
|| ||||| || ||||| ||||||||||| || | || ||||| ||| ||| ||||
Sbjct 4034 GACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTTCCTTGTGCCTATTTTGCT 4093
Query 163977 ATTGGTGGCTGGCTTACTGGTACAACGTTTGTTACCAGTTGGTACACCCACGGTCTCGC- 164035
| || || ||| | || |||||||| ||||| || ||||| || || || | ||
Sbjct 4094 TTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGGTATACTCATGGATTGGCC 4153
Query 164036 -GT--CTAGTTACCTTGAGGGTGCTAATTTCCTTACAGCGGCTGTGTCAACGCCTGCTGA 164092
|| ||| ||| ||| ||| ||||| | || || || || || || |||||| |
Sbjct 4154 AGTTCCTATTTAGA---AGGTTGC-AATTTTTTAACCGCTGCGGTTTCTACTCCTGCTAA 4209
Query 164093 TGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGGACTTCATTAG 164152
| | | | ||||| | | |||| ||||||||||| | || || || || | | |
Sbjct 4210 TAGTTTAGCGCATTCGTTGTTGTTACTGTGGGGTCCTGAAGCACAAGGAGATTTTACTCG 4269
Query 164153 GTGGTGCCAACTTGGGGGACTCTGGGCTTTTGTGGCGTTCCACGGATCTTTCGCTCTGAT 164212
||||| ||| | || || || ||| ||||||| || ||||||| ||||||| | ||
Sbjct 4270 TTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTTGCTCTCCACGGCGCTTTCGCATTAAT 4329
Query 164213 CGGTTTCATGCTTCGGCAGTTTGAAATTGCACGTCTTGTAGGTATCCGTCCGTACAATGC 164272
||||| ||| | || || |||||| |||| || ||| | || || || |||||
Sbjct 4330 AGGTTTTATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAATTGCGACCTTATAATGC 4389
Query 164273 TATTGCGTTCTCTGGTCCGATTGCTGTCTTTGTCAGCGTTTTCCTTATGTACCCTCTCGG 164332
|| || ||||||||||| |||||||| ||||| || ||||| || || || || ||
Sbjct 4390 AATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTCTTCCTAATTTATCCACTAGG 4449
Query 164333 GCAATCTAGTTGGTTCTTTGCCCCCTCGTTTGGGGTCGCGGCGATCTTCAGATTCCTCTT 164392
|||||| ||||||||||||| || ||||| || ||||| || || |||| || |
Sbjct 4450 TCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTATTTTTCGATTTATCCT 4509
Query 164393 GTTCCTCCAAGGTTTCCATAACTGGACACTCAACCCCTTCCATATGATGGGTGTTGCAGG 164452
|| ||||||| || ||||| |||||| | ||||| || ||||||||||| || || ||
Sbjct 4510 CTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATGGGAGTCGCCGG 4569
Query 164453 CATCCTTGGTGGTGCTCTTCTCTGTGCTATTCATGGTGCTACCGTAGAGAATACTTTGTT 164512
| || || | ||||| || || ||||||||||||||||| ||||| |||||||| ||
Sbjct 4570 TGTACTGGGCGCGGCTCTGCTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTATT 4629
Query 164513 TGAAGATGGTGAACAATCAAATACTTTCAAGGCATTCGAGCCTACTCAAGAGGAAGAGAC 164572
|||||||||||| ||||||| ||| || || | || ||||||| ||||| ||
Sbjct 4630 TGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAAAC 4689
Query 164573 TTACTCGATGGTCACTGCCAACCGCTTCTGGTCTCAGATTTTTGGTATTGCTTTCAGCAA 164632
||| || |||||||| || |||||||| ||||| || || ||||| ||||||| |||
Sbjct 4690 TTATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTGGGGTTGCTTTTTCCAA 4749
Query 164633 TAAGCGTTGGTTGCACTTCTTTATGCTCTTTGTTCCTGTCATGGGACTTTGGACAAGTTC 164692
||| |||||||| || ||||||||| | ||||| || || | || | |||| ||| |
Sbjct 4750 TAAACGTTGGTTACATTTCTTTATGTTATTTGTACCGGTAACTGGTTTATGGATGAGTGC 4809
Query 164693 TATTGGTATCATCGGTCTCGCACTCAATCTTCGTGCTTATGATTTTGTGTCTCAGGAGAT 164752
| |||| | ||||||| || | || || || || ||||| ||||| || ||||| ||
Sbjct 4810 TCTTGGAGTAGTCGGTCTAGCTTTGAACCTACGCGCCTATGACTTTGTTTCCCAGGAAAT 4869
Query 164753 TAGAGCAGCAGAGGATCCTGAATTTGAGACGTTCTATACGAAGAACATCCTCCTCAATGA 164812
| ||||| || ||||| ||||||||||| ||||| || || || || || | || ||
Sbjct 4870 CCGTGCAGCGGAAGATCCGGAATTTGAGACTTTCTACACTAAAAATATTCTTTTAAACGA 4929
Query 164813 AGGACTCCGTGCCTGGATGGCTCCAGTAGACCAGCCACACGAATCGTTTGTATTTCCAGA 164872
||| | ||||| |||||||| | ||| ||||| || ||| || |||| || ||
Sbjct 4930 AGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGA 4989
Query 164873 GGAAGTTCTTCCGAGAGGTAACGCACTCTAA 164903
||| ||||| || | || ||||| || |||
Sbjct 4990 GGAGGTTCTACCACGTGGAAACGCTCTTTAA 5020
>seq14836
Length=433140
Score = 102 bits (112), Expect = 9e-17
Identities = 197/282 (70%), Gaps = 9/282 (3%)
Strand=Plus/Plus
Query 50032 TTACAATGTTACCCTAATCACT---GATGATGGTGAAGTCAACATCGTATGTGATGAAGA 50088
|||||| || | | |||||| || ||||| || || | || | ||||||||| ||
Sbjct 174354 TTACAAGGTGAAATTCATCACTCCAGAAGATGGAGAGGTAGAAATTGAATGTGATGACGA 174413
Query 50089 CA-CTTCGATTTTGGATGCTGCAGAAGAACAAGGCGTAGACATCAATTATTCTTGTCGTG 50147
|| || | ||| | ||||| |||||| || | ||| | || ||||| |||
Sbjct 174414 TGTCTACGTTCTTG-ACGCTGCTGAAGAAGCTGGAATTGACTTGCCTTTCTCTTGCCGTT 174472
Query 50148 CAGGAGCATGTTCCTCTTGTGCTGGTAAAATCATTGAGGGTACTGTTGACCAGGAAGATC 50207
| || | ||||| |||||||||||| | | |||| | |||||||| ||||
Sbjct 174473 CTGGTTCTTGTTCAAGCTGTGCTGGTAAAGTTGTGTCTGGTAATATTGACCAGACAGAT- 174531
Query 50208 AATCA-TTTCTTGATGATGATCAACTTGAAGCTGGTTTTGTCTTGACATGTGTAGCTCGT 50266
||||| || |||||||||||||| | | ||||| | |||| | || |||||||||
Sbjct 174532 AATCAGTTCCTTGATGATGATCAGATGGCTGCTGGCTATGTCCTCACTTGTGTAGCTTAC 174591
Query 50267 CCTACTTCGGACTGTACT-ATTGAAACAGGAAAAGAAGAAGA 50307
|||||||| || ||| | |||||||| |||||||||||
Sbjct 174592 CCTACTTCTGA-TGTTGTCATTGAAACTCACAAAGAAGAAGA 174632
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 559199969820800
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