Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14] 18,312 sequences; 192,487,774 total letters Query= NC_031927.1 Length=216121 Score E Sequences producing significant alignments: (Bits) Value seq11872 105 9e-18 seq14692 91.5 2e-13 >seq11872 Length=1434425 Score = 105 bits (116), Expect = 9e-18 Identities = 159/226 (70%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 162607 GCCTCTAGCGGTATTCTATTCAATCACGAAAGCTCACGCAGAGGAGAGACGTTCGTCACA 162666 |||| | ||| || |||||||| ||||| | ||| | || |||| ||||| || Sbjct 1400853 GCCTGCAACGGAATACTATTCAACCACGAGTCACCTCGCCGGGGCGAGAACTTCGTGACT 1400912 Query 162667 CGCAAGATCGTCCGAGCCTTGTCCCGAATTAGTGTGGGACTCCAAAGTGATCTACAACTT 162726 || || || |||||||| || || | || ||| | || | | || || Sbjct 1400913 CGGAAAATAACAAGAGCCTTGGGACGTATCAAGGTCGGATTGCAGCGGAAGCTCTTCCTA 1400972 Query 162727 GGAAACCTCAATGCCCGACGTGACTGGGGACACGCCAAAGACTACGTAGAGGCTATGTGG 162786 ||||||||| | || ||| ||||||||| ||| |||||||| ||||| |||||| Sbjct 1400973 GGAAACCTCCAGGCATCACGAGACTGGGGATTCGCAGGGGACTACGTGGAGGCAATGTGG 1401032 Query 162787 TTGATGCTTCAGCAAGAGAAGCCAGATGATTATGTGATCGCAACTG 162832 | ||||| ||||||||||| ||||||||||| ||| | ||||||| Sbjct 1401033 CTAATGCTGCAGCAAGAGAAACCAGATGATTACGTGGTGGCAACTG 1401078 >seq14692 Length=404227 Score = 91.5 bits (100), Expect = 2e-13 Identities = 487/761 (64%), Gaps = 24/761 (3%) Strand=Plus/Plus Query 163259 TATGTAATCCTAGCTGCTGCCCTAGTCGGCGGCATTATGGCTAACAAGACTCGCAAAGCG 163318 ||||| || |||| || || |||||| || ||| || ||||| ||| | ||| Sbjct 349965 TATGTCTTCTTAGCAGCAGCTAAAGTCGGTGGAATTCACGCCAACAACACTTACCCAGCT 350024 Query 163319 GAGTTCTTACACGACAATCTAATGATGCAGTGTAATGTAATTGACTCTGCTTACTATTCA 163378 || ||| | | ||||| || || |||||||| |||| |||| | | Sbjct 350025 GATTTCATTGGTGTAAATCTCCAAATCCAAACCAATGTAATCCACTCAGCTTTTCAATAC 350084 Query 163379 GGTGTTAAGAAGCTCCTATTCCTAGGAACATCTTGCATCTATCCTGC-TGGACGCCAACA 163437 ||||| |||||||| || ||||| || | |||||||| || || | | || || Sbjct 350085 GGTGTAAAGAAGCTTCTCTTCCTTGGTTCCTCTTGCATTTACCCCAAATTTGCTCCT-CA 350143 Query 163438 CCCACTAAAAGAAAATGAACTCCTTACGGGGGCTCTTGAGCCTACTAACGACGCTTACGC 163497 ||| || ||| | || || || | | ||||| || || ||||| ||||| Sbjct 350144 ACCAATACCTGAATCAGCTCTACTCACTGCACCACTTGAACCAACAAACGAGTGGTACGC 350203 Query 163498 CATCGCAAAGATCGCAGGAATCAAACAATGTGACTTCTACAGGGAGCAATATGGATTTGA 163557 ||| || ||||| ||||| || || ||| | |||||| ||| | | || Sbjct 350204 CATTGCTAAGATTGCAGGCATTAAGATGTGTCAAGCTTACAGGATCCAACACAACTGGGA 350263 Query 163558 TGCTATCTCTATTATGCCTCCTAATCTATATGGTCCTGGAGACAATTTCCACG-AGGGA- 163615 ||| ||||| |||||| | || || || ||||| ||||| |||||| || || Sbjct 350264 TGCAATCTCCGGTATGCCAACAAACCTCTACGGTCCAAACGACAACTTCCACCCAGAGAA 350323 Query 163616 ---TCAGGTCACGTCCTCGCATCGTTGATGAACCGCTTCCACAACGCCAAGGTGGCTGGT 163672 ||| || || |||| || || | |||| | ||||| | || || || | Sbjct 350324 TTCTCATGT-ACTTCCT-GC-TC--TAATGAGAAGATTCCATGAGGCTAAAGTCAATAAC 350378 Query 163673 GAAGCCACTGTAGCTTGCTGGGGTGACGGAACACCTATGAGAGAGTTTCT-CTTCTCTGA 163731 | || || | | ||||||| || | ||| | |||||||| | | | || || Sbjct 350379 GCAGATGAAGTTGTTGTCTGGGGTACTGGTAGCCCTTTAAGAGAGTTCTTACATGTC-GA 350437 Query 163732 AGACCTAGCAGAAGCCTGTGCGTTCTTTATGGATAACTACAGTGACTACGGTCACGTCAA 163791 || ||||| || || || ||||| |||||| | ||||||| || | || || || Sbjct 350438 TGATCTAGCTGATGCTTGCATTTTCTTGATGGATCAGTACAGTGGCTTGGAACATGTTAA 350497 Query 163792 TGTTGGAACTGGTGAAGACATCACCATCAAACACCTAGCAGAGAGTATTGC--AAAG--G 163847 ||| |||| |||| || | || |||||| | | || || |||| |||| | Sbjct 350498 TGTAGGAAGTGGTATTGAAGTAACTATCAAAGAATTGGCTGA----ATTGGTTAAAGAAG 350553 Query 163848 TTATTGGTTTTGAAGGAGAGATCCTATGGGACACTTCAAAACCAAATGGAAATCCTCGCA 163907 || |||||||| ||||| || | |||||| | | |||||| | || | || || | Sbjct 350554 TTGTTGGTTTTAAAGGAAAGCTTGAATGGGATTCGACGAAACCAGACGGTACACCGCGAA 350613 Query 163908 AATTACTTGACAGCACTGTGGCTAA-TGAGTTAGGATGGAAGCCCAAGACCAGTTTTGAA 163966 |||| | || ||| | | |||| | ||| ||||||| || ||| | | ||||| Sbjct 350614 AATTGATGGATAGCTC-GAAGCTAGCTTCGTTGGGATGGACACCAAAGGTTACTCTTGAA 350672 Query 163967 GATGGTCTACAGAAAACTTACAACTGGTATTTAAACAATGT 164007 |||||||| | ||||||| | |||||||| | ||||| Sbjct 350673 GATGGTCTTCGTCAAACTTATGATTGGTATTTGCAGAATGT 350713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 691300924989120