Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20hypochondriacus_20[genbank_20GCA_5F000753965.1_202014- 09-10] 117,340 sequences; 502,147,592 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq1864 138 2e-30 seq3048 122 2e-25 >seq1864 Length=48117 Score = 138 bits (152), Expect = 2e-30 Identities = 134/170 (79%), Gaps = 2/170 (1%) Strand=Plus/Plus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||| |||||||| | || |||| |||||| ||||| || |||||| ||| || ||| Sbjct 11136 CACGAGGCATTGG-TCTATTAGGCGTTCGCC-ATTGTGGAAAATTCCCAACTACTCCCTT 11193 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||||||| | |||||||||| | ||| |||| || |||||||||| | |||| | Sbjct 11194 TTGTAGGAGTCTAGGCCGTGTCTCAATCCCATTGTGGCTAGTCATCCTCTCGGGCCAGCT 11253 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC 198 | |||| ||||||| || || ||||| ||||||||||||||||| ||| Sbjct 11254 AATGATCATCGCCTTAGTAAGTTATTACGTCACCAACTAGCTAATCAGAC 11303 >seq3048 Length=42825 Score = 122 bits (134), Expect = 2e-25 Identities = 110/137 (80%), Gaps = 1/137 (1%) Strand=Plus/Minus Query 60 CATTGTCCAATATTCCCCA-CTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCC 118 ||||||| |||| | | | |||||||||||||||||||| ||| ||| ||| | || Sbjct 30002 CATTGTCTAATACTGCGAAACTGCTGCCTCCCGTAGGAGTTTGGGTCGTAACTCTATCCC 29943 Query 119 AGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCT 178 | |||| |||| ||| |||||||||||| ||| || | || |||| || ||| ||||||| Sbjct 29942 ACTGTGGCTGACCATGCTCTCAGACCAGCTACTGACCATCACCTTAGTAAGCTATTACCT 29883 Query 179 CACCAACTAGCTAATCC 195 || |||||||||||||| Sbjct 29882 CAGCAACTAGCTAATCC 29866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1070742115200