Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20hypochondriacus_20[genbank_20GCA_5F000753965.1_202014- 09-10] 117,340 sequences; 502,147,592 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq1864 114 3e-23 seq3048 98.7 2e-18 >seq1864 Length=48117 Score = 114 bits (126), Expect = 3e-23 Identities = 116/151 (77%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 25 CCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCC 84 |||||||| || || ||| ||| || ||| |||||||||| |||||||||||| |||| Sbjct 11164 CCATTGTGGAAAATTCCCAACTACTCCCTTTTGTAGGAGTCTAGGCCGTGTCTCAATCCC 11223 Query 85 AATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGTGGGCTATTATCT 144 | |||||| ||| |||||| | || |||| |||| ||| ||| || | ||||| | Sbjct 11224 ATTGTGGCTAGTCATCCTCTCGGGCCAGCTAATGATCATCGCCTTAGTAAGTTATTACGT 11283 Query 145 CACCAACTACCTAATCGGCCGCGAGCCCATC 175 ||||||||| |||||| | | | ||||| || Sbjct 11284 CACCAACTAGCTAATCAGACACAAGCCCCTC 11314 >seq3048 Length=42825 Score = 98.7 bits (108), Expect = 2e-18 Identities = 92/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 44 ACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTC 103 ||||||||||||||||||||| |||| ||| ||| ||||| |||||| | || ||| Sbjct 29983 ACTGCTGCCTCCCGTAGGAGTTTGGGTCGTAACTCTATCCCACTGTGGCTGACCATGCTC 29924 Query 104 TCAGTCCGGCTACCGATCGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATC 160 |||| || ||||| || | || ||| || ||||||| |||| |||||| |||||| Sbjct 29923 TCAGACCAGCTACTGACCATCACCTTAGTAAGCTATTACCTCAGCAACTAGCTAATC 29867 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 997228477440